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An individual-based model of stochastic branching is proposed and studied, in which point particles drift in $\bar{\mathds{R}}_{+}:=[0,+\infty)$ towards the origin (edge) with unit speed, where each of them splits into two particles that…

Dynamical Systems · Mathematics 2019-10-30 Yuri Kozitsky

In spite of many attempts to model dense granular flow, there is still no general theory capable of describing different types of flows, such as gravity-driven drainage in silos and wall-driven shear flows in Couette cells. Here, we…

Soft Condensed Matter · Physics 2009-11-11 Ken Kamrin , Chris H. Rycroft , Martin Z. Bazant

The dynamics of an adhesive two-dimensional vesicle doublet under various flow conditions is investigated numerically using a high-order, adaptive-in-time boundary integral method. In a quiescent flow, two nearby vesicles move slowly…

Fluid Dynamics · Physics 2019-07-23 Bryan Quaife , Shravan Veerapaneni , Y. -N. Young

We propose a three dimensional mechanical model of embryonic tissue dynamics. Mechanically coupled adherent cells are represented as particles interconnected with elastic beams which can exert non-central forces and torques. Tissue…

Biological Physics · Physics 2015-06-22 Andras Czirok , Dona Greta Isai

A living cell actively generates traction forces on its environment with its actin cytoskeleton. These forces deform the cell elastic substrate which, in turn, affects the traction forces exerted by the cell and can consequently modify the…

Biological Physics · Physics 2022-02-03 H. Chelly , A. Jahangiri , M. Mireux , J. Étienne , D. K. Dysthe , C. Verdier , P. Recho

We demonstrate the generation of diverse material flow regimes in nematic liquid cells as driven by time-variable active surface anchoring, including no-net flow, oscillatory flow, steady flow, and pulsating flow. Specifically, we…

Soft Condensed Matter · Physics 2025-01-07 Seyed Reza Seyednejad , Miha Ravnik

In this work, we present a coupled 3D-1D model of solid tumor growth within a dynamically changing vascular network to facilitate realistic simulations of angiogenesis. Additionally, the model includes erosion of the extracellular matrix,…

Tissues and Organs · Quantitative Biology 2021-06-23 Marvin Fritz , Prashant K. Jha , Tobias Köppl , J. Tinsley Oden , Andreas Wagner , Barbara Wohlmuth

We report experiments on slow granular flows in a split-bottom Couette cell that show novel strain localization features. Nontrivial flow profiles have been observed which are shown to be the consequence of simultaneous formation of shear…

Soft Condensed Matter · Physics 2013-10-08 Robabeh Moosavi , M. Reza Shaebani , Maniya Maleki , Janos Torok , Dietrich E. Wolf , Wolfgang Losert

Cell growth, division and death are defining features of biological tissues that contribute to morphogenesis. In hydrodynamic descriptions of cohesive tissues, their occurrence implies a non-zero rate of variation of cell density. We show…

Tissues and Organs · Quantitative Biology 2017-08-23 Shunsuke Yabunaka , Philippe Marcq

We performed two-dimensional Molecular Dynamics simulations of cohesive disks under shear. The cohesion between the disks is added by the action of springs between very next neighbouring disks, modelling capillary forces. The geometry of…

Soft Condensed Matter · Physics 2007-05-23 N. Olivi-Tran , O. Pozo , N. Fraysse

Non-spherical particles transported by an anisotropic turbulent flow preferentially align with the mean shear and intermittently tumble when the local strain fluctuates. Such an intricate behaviour is here studied for inertialess,…

Soft Condensed Matter · Physics 2022-12-27 Lorenzo Campana , Mireille Bossy , Jeremie Bec

The purpose of this work is to propose a non-Markovian and nonlinear model of subdiffusive transport that involves adhesion affects the cells escape rates form position x, with chemotaxis. This leads the escape rates to be dependent on the…

Cell Behavior · Quantitative Biology 2016-03-02 Akram Al-Sabbagh

We present a study of the spreading of liquid droplets on a solid substrate at very small scales. We focus on the regime where effective wetting energy (binding potential) and surface tension effects significantly influence steady and…

Fluid Dynamics · Physics 2017-02-15 Hanyu Yin , David N. Sibley , Uwe Thiele , Andrew J. Archer

In modeling the inflammatory response to a lesion in an artery wall, there are a number of chemotactic mechanisms going on within the wall layer that lead to an arterial plaque. We introduce a rather reduced model of these dynamic…

Analysis of PDEs · Mathematics 2015-11-10 Jonathan Bell , Animikh Biswas

We present a model for the dynamics of a population of bacteria with a continuum of traits, who compete for resources and exchange horizontally (transfer) an otherwise vertically inherited trait with possible mutations. Competition…

Probability · Mathematics 2017-07-27 Sylvain Billiard , Pierre Collet , Régis Ferrière , Sylvie Méléard , Viet Chi Tran

We report measurements in a 2-dimensional, gravity-driven, collisional, granular flow of the normal force delivered to the wall and of particle velocity at several points in the flow. The wall force and the flow velocity are negatively…

Soft Condensed Matter · Physics 2007-05-23 Emily Gardel , Ellen Keene , Sonia Dragulin , Nalini Easwar , Narayanan Menon

The purpose of this paper is to examine the Lagrangian stochastic modeling of the fluid velocity seen by inertial particles in a nonhomogeneous turbulent flow. A new Langevin-type model, compatible with the transport equation of the drift…

Fluid Dynamics · Physics 2009-07-01 Boris Arcen , Anne Tanière

A model is proposed to study the process of hypoxia-induced angiogenesis in cancer cells. The model accounts for the role played by the vascular endothelial growth factor (VEGF)-A in regulating the oxygen intake. VEGF-A is dynamically…

Cell Behavior · Quantitative Biology 2010-12-13 Pasquale Laise , Francesca Di Patti , Duccio Fanelli , Marika Masselli , Annarosa Arcangeli

The article demonstrates that the internal circulation velocity and patterns in sessile droplets on superhydrophobic surfaces is governed by the surface curvature. Particle Image Velocimetry reveals that increasing convexity deteriorates…

Fluid Dynamics · Physics 2018-06-15 Gargi Khurana , A R Harikrishnan , Vivek Jaiswal , Purbarun Dhar

In this work, we discuss some points relevant for stochastic modelling of one- and two-phase turbulent flows. In the framework of stochastic modelling, also referred to PDF approach, we propose a new Langevin model including all viscosity…

Fluid Dynamics · Physics 2010-09-14 Sergio Chibbaro , Jean-Pierre Minier