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Peptide de novo sequencing is a method used to reconstruct amino acid sequences from tandem mass spectrometry data without relying on existing protein sequence databases. Traditional deep learning approaches, such as Casanovo, mainly…

Machine Learning · Computer Science 2025-07-16 Chi-en Amy Tai , Alexander Wong

We consider a general framework for reducing the number of trainable model parameters in deep learning networks by decomposing linear operators as a product of sums of simpler linear operators. Recently proposed deep learning architectures…

Machine Learning · Computer Science 2019-05-27 Chai Wah Wu

Graph Neural Networks (GNN) exhibit superior performance in graph representation learning, but their inference cost can be high, due to an aggregation operation that can require a memory fetch for a very large number of nodes. This…

Machine Learning · Computer Science 2025-03-18 Yaochen Hu , Mai Zeng , Ge Zhang , Pavel Rumiantsev , Liheng Ma , Yingxue Zhang , Mark Coates

The min-sum (MS) algorithm is arguably the second most fundamental algorithm in the realm of message passing due to its optimality (for a tree code) with respect to the {\em block error} probability \cite{Wiberg}. There also seems to be a…

Information Theory · Computer Science 2007-07-13 Kapil Bhattad , Vishwambhar Rathi , Ruediger Urbanke

Deep neural networks (DNNs) usually demand a large amount of operations for real-time inference. Especially, fully-connected layers contain a large number of weights, thus they usually need many off-chip memory accesses for inference. We…

Computer Vision and Pattern Recognition · Computer Science 2017-07-13 Yoonho Boo , Wonyong Sung

Message-passing algorithms based on belief-propagation (BP) are successfully used in many applications including decoding error correcting codes and solving constraint satisfaction and inference problems. BP-based algorithms operate over…

Information Theory · Computer Science 2013-07-16 Guy Even , Nissim Halabi

The scalability and interpretability of message-passing (MP) decoding, such as (quaternary) Belief Propagation, remain open challenges in quantum error correction. Even for surface codes, arguably the first testbed for decoding methods,…

Quantum Physics · Physics 2026-05-26 Boqing Zhang , Henry D. Pfister , Hanwen Yao , Siyuan Niu

Binary neural networks (BNNs) have been widely adopted to reduce the computational cost and memory storage on edge-computing devices by using one-bit representation for activations and weights. However, as neural networks become…

Computer Vision and Pattern Recognition · Computer Science 2023-08-29 Quang Hieu Vo , Linh-Tam Tran , Sung-Ho Bae , Lok-Won Kim , Choong Seon Hong

Neural channel decoder, as a data-driven channel decoding strategy, has shown very promising improvement on error-correcting capability over the classical methods. However, the success of those deep learning-based decoder comes at the cost…

Information Theory · Computer Science 2026-05-20 Chengwei Zhang , Yifan Du , Siyu Liao

This paper proposes a novel procedure for training an encoder-decoder based deep neural network which compresses NxM models into a single model enabling us to dynamically choose the number of encoder and decoder layers for decoding.…

Computation and Language · Computer Science 2019-08-29 Raj Dabre , Atsushi Fujita

The large memory requirements of deep neural networks limit their deployment and adoption on many devices. Model compression methods effectively reduce the memory requirements of these models, usually through applying transformations such…

Machine Learning · Computer Science 2017-11-15 Brandon Reagen , Udit Gupta , Robert Adolf , Michael M. Mitzenmacher , Alexander M. Rush , Gu-Yeon Wei , David Brooks

End-to-end trainable models have reached the performance of traditional handcrafted compression techniques on videos and images. Since the parameters of these models are learned over large training sets, they are not optimal for any given…

Image and Video Processing · Electrical Eng. & Systems 2022-10-12 Oussama Jourairi , Muhammet Balcilar , Anne Lambert , François Schnitzler

Incorporating diffusion models in the image compression domain has the potential to produce realistic and detailed reconstructions, especially at extremely low bitrates. Previous methods focus on using diffusion models as expressive…

Image and Video Processing · Electrical Eng. & Systems 2024-10-10 Lucas Relic , Roberto Azevedo , Markus Gross , Christopher Schroers

We establish the convergence of the min-sum message passing algorithm for minimization of a broad class of quadratic objective functions: those that admit a convex decomposition. Our results also apply to the equivalent problem of the…

Information Theory · Computer Science 2008-12-24 Ciamac C. Moallemi , Benjamin Van Roy

Deep neural networks are state-of-the-art models for understanding the content of images, video and raw input data. However, implementing a deep neural network in embedded systems is a challenging task, because a typical deep neural…

Machine Learning · Computer Science 2016-04-22 Xichuan Zhou , Shengli Li , Kai Qin , Kunping Li , Fang Tang , Shengdong Hu , Shujun Liu , Zhi Lin

Recently, neural networks have improved MinSum message-passing decoders for low-density parity-check (LDPC) codes by multiplying or adding weights to the messages, where the weights are determined by a neural network. The neural network…

Signal Processing · Electrical Eng. & Systems 2023-12-06 Linfang Wang , Caleb Terrill , Richard Wesel , Dariush Divsalar

Neural Machine Translation (NMT) currently exhibits biases such as producing translations that are too short and overgenerating frequent words, and shows poor robustness to copy noise in training data or domain shift. Recent work has tied…

Computation and Language · Computer Science 2021-05-19 Mathias Müller , Rico Sennrich

We consider a broadcast channel with a degraded message set, in which a single transmitter sends a common message to two receivers and a private message to one of the receivers only. The main goal of this work is to find new lower bounds to…

Information Theory · Computer Science 2009-06-09 Yonatan Kaspi , Neri Merhav

Efficient high-performance decoding of topological stabilizer codes has the potential to crucially improve the balance between logical failure rates and the number and individual error rates of the constituent qubits. High-threshold…

Effective iterative decoding of short BCH codes faces two primary challenges: identifying an appropriate parity-check matrix and accelerating decoder convergence. To address these issues, we propose a systematic scheme to derive an…

Information Theory · Computer Science 2024-11-22 Guangwen Li , Xiao Yu
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