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We initiate a program of average smoothness analysis for efficiently learning real-valued functions on metric spaces. Rather than using the Lipschitz constant as the regularizer, we define a local slope at each point and gauge the function…
We performed a series of simulations for a linear polymer chain in a solvent using dissipative particle dynamics to check the scaling relations for the end-to-end distance, radius of gyration and hydrodynamic radius in three dimensions. The…
Polymer chains in colloid-polymer mixtures can be coarse-grained by replacing them with single soft particles interacting via effective polymer-polymer and polymer-colloid pair potentials. Here we describe in detail how Ornstein-Zernike…
We examine entanglements using monomer contacts between pairs of chains in a Brownian-dynamics simulation of a polymer melt. A map of contact positions with respect to the contacting monomer numbers (i,j) shows clustering in small regions…
Polymeric materials that couple deformation and electrostatics have the potential for use in soft sensors and actuators with potential applications ranging from robotic, biomedical, energy, aerospace and automotive technologies. In contrast…
We provide and discuss complex analytic methods for overcoming the formal character of formal deformation quantization. This is a necessity for returning to physically meaningful statements, and accounts for the fact that the formal…
We have developed a generalized semi-analytic approach for efficiently computing cyclization and looping $J$ factors of DNA under arbitrary binding constraints. Many biological systems involving DNA-protein interactions impose precise…
In this work, propagation of acoustic waves in a one-dimensional binary chain with different types of correlations in elasticity distribution is studied. We applied entropic analysis to investigate and quantify the…
The breakage of a polymer chain of segments, coupled by anharmonic bonds with applied constant external tensile force is studied by means of Molecular Dynamics simulation. We show that the mean life time of the chain becomes progressively…
We study a stochastic model of a copolymerization process that has been extensively investigated in the physics literature. The main questions of interest include: (i) what are the criteria for transience, null recurrence, and positive…
In this work, a framework for deriving theoretical equations for mean squared displacement (MSD) and fractional Fokker-Planck (FFP) is developed for any arbitrary rheological model. The obtained general results are then specified for…
Low-rank decompositions to reduce the Coulomb operator to a pairwise form suitable for its quantum simulation are well-known in quantum chemistry, where the underlying basis functions are real-valued. We generalize the result of Motta…
The non-linear response of entangled polymers to shear flow is complicated. Its current understanding is framed mainly as a rheological description in terms of the complex viscosity. However, the full picture requires an assessment of the…
Emergence and maintenance of polymers with complex sequences is a major question in the study of origins of life. To answer this, we studied a model polymerization reaction, where polymers are synthesized by stepwise ligation from two types…
Movements of molecular motors on cytoskeletal filaments are described by directed walks on a line. Detachment from this line is allowed to occur with a small probability. Motion in the surrounding fluid is described by symmetric random…
We derive Glynn's formula from Ryser's formula for the permanent. We further establish via an orbital argument that Glynn's formula yields an optimal row-homogeneous Chow-decomposition of the permanent. We introduce a method for…
We study the problem of stabilization for the acoustic system with a spatially distributed damping. Without imposing any hypotheses on the structural properties of the damping term, we identify logarithmic decay of solutions with growing…
We study the interplay between entropy and topological constraints for a polymer chain in which sliding rings (slip-links) enforce pair contacts between monomers. These slip-links divide a closed ring polymer into a number of sub-loops…
The equilibrium structure and dynamics of a single polymer chain in a thermal solvent is by now well-understood in terms of scaling laws. Here we consider a polymer in a bacterial bath, i.e. in a solvent consisting of active particles which…
Oceanic waves registered by satellite observations often have curvilinear fronts and propagate over various currents. In this paper, we study long linear and weakly-nonlinear ring waves in a stratified fluid in the presence of a…