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We study approximation algorithms for variants of the \emph{median string} problem, which asks for a string that minimizes the sum of edit distances from a given set of $m$ strings of length $n$. Only the straightforward $2$-approximation…

Data Structures and Algorithms · Computer Science 2020-11-03 Diptarka Chakraborty , Debarati Das , Robert Krauthgamer

We present a permutation-invariant distance between atomic configurations, defined through a functional representation of atomic positions. This distance enables to directly compare different atomic environments with an arbitrary number of…

Materials Science · Physics 2015-09-30 Gregoire Ferre , Jean-Bernard Maillet , Gabriel Stoltz

The Ulam distance of two permutations on $[n]$ is $n$ minus the length of their longest common subsequence. In this paper, we show that for every $\varepsilon>0$, there exists some $\alpha>0$, and an infinite set $\Gamma\subseteq…

Information Theory · Computer Science 2024-05-14 Elazar Goldenberg , Mursalin Habib , Karthik C. S

We study the size (or volume) of balls in the metric space of permutations, $S_n$, under the infinity metric. We focus on the regime of balls with radius $r = \rho \cdot (n\!-\!1)$, $\rho \in [0,1]$, i.e., a radius that is a constant…

Information Theory · Computer Science 2017-04-21 Moshe Schwartz , Pascal O. Vontobel

Rank aggregation seeks a representative permutation for a collection of rankings and plays a central role in areas such as social choice, information retrieval, and computational biology. Two fundamental aggregation tasks are the center and…

Data Structures and Algorithms · Computer Science 2026-04-29 Tian Bai , Fedor V. Fomin , Petr A. Golovach , Yash Hiren More , Simon Wietheger

We propose a novel scheme that allows MIMO system to modulate a set of permutation matrices to send more information bits, extending our initial work on the topic. This system is called Permutation Matrix Modulation (PMM). The basic idea is…

Information Theory · Computer Science 2022-12-27 Rahmat Faddli Siregar , Nandana Rajatheva , Matti Latva-Aho

Permutation codes have recently garnered substantial research interest due to their potential in various applications including cloud storage systems, genome resequencing and flash memories. In this paper, we study the theoretical bounds…

Information Theory · Computer Science 2020-01-06 Siyi Yang , Clayton Schoeny , Lara Dolecek

A lower bound on the minimum required code length of binary codes is obtained. The bound is obtained based on observing a close relation between the Ulam's liar game and channel coding. In fact, Spencer's optimal solution to the game is…

Information Theory · Computer Science 2010-07-27 Kaveh Mahdaviani , Shervin Shahidi , Shima Haddadi , Masoud Ardakani , Chintha Tellambura

A permutation array(or code) of length $n$ and distance $d$, denoted by $(n,d)$ PA, is a set of permutations $C$ from some fixed set of $n$ elements such that the Hamming distance between distinct members $\mathbf{x},\mathbf{y}\in C$ is at…

Information Theory · Computer Science 2008-01-28 Lizhen Yang , Ling Dong , Kefei Chen

We survey permutation-based methods for approximate k-nearest neighbor search. In these methods, every data point is represented by a ranked list of pivots sorted by the distance to this point. Such ranked lists are called permutations. The…

Machine Learning · Computer Science 2016-11-01 Bilegsaikhan Naidan , Leonid Boytsov , Eric Nyberg

We investigate lossy compression (source coding) of data in the form of permutations. This problem has direct applications in the storage of ordinal data or rankings, and in the analysis of sorting algorithms. We analyze the rate-distortion…

Information Theory · Computer Science 2016-11-18 Da Wang , Arya Mazumdar , Gregory Wornell

Commonly the direct construction and the description of mutually orthogonal Latin squares (MOLS) makes use of difference or quasi-difference matrices. Now there exists a correspondence between MOLS and separable permutation codes. We like…

Combinatorics · Mathematics 2024-12-04 Ingo Janiszczak , Reiner Staszewski

A set of linearly constrained permutation matrices are proposed for constructing a class of permutation codes. Making use of linear constraints imposed on the permutation matrices, we can formulate a minimum Euclidian distance decoding…

Information Theory · Computer Science 2015-03-17 Tadashi Wadayama , Manabu Hagiwara

Linear constraints for a matrix polytope with no fractional vertex are investigated as intersecting research among permutation codes, rank modulations, and linear programming methods. By focusing the discussion to the block structure of…

Combinatorics · Mathematics 2012-02-07 Manabu Hagiwara

The classical rank aggregation problem seeks to combine a set X of n permutations into a single representative "consensus" permutation. In this paper, we investigate two fundamental rank aggregation tasks under the well-studied Ulam metric:…

Data Structures and Algorithms · Computer Science 2025-04-28 Nick Fischer , Elazar Goldenberg , Mursalin Habib , Karthik C. S.

Motivated by the rank modulation scheme, a recent work by Sala and Dolecek explored the study of constraint codes for permutations. The constraint studied by them is inherited by the inter-cell interference phenomenon in flash memories,…

Information Theory · Computer Science 2014-01-21 Sarit Buzaglo , Eitan Yaakobi

Synthesis of DNA molecules offers unprecedented advances in storage technology. Yet, the microscopic world in which these molecules reside induces error patterns that are fundamentally different from their digital counterparts. Hence, to…

Information Theory · Computer Science 2017-08-08 Netanel Raviv , Moshe Schwartz , Eitan Yaakobi

In this paper, we introduce a new way of constructing and decoding multipermutation codes. Multipermutations are permutations of a multiset that may consist of duplicate entries. We first introduce a new class of matrices called…

Information Theory · Computer Science 2014-09-29 Xishuo Liu , Stark C. Draper

Mutually unbiased weighing matrices (MUWM) are closely related to an antipodal spherical code with 4 angles. In the present paper, we clarify the relationship between MUWM and the spherical sets, and give the complete solution about the…

Combinatorics · Mathematics 2014-04-03 Hiroshi Nozaki , Sho Suda

The rank metric measures the distance between two matrices by the rank of their difference. Codes designed for the rank metric have attracted considerable attention in recent years, reinforced by network coding and further motivated by a…

Information Theory · Computer Science 2022-03-24 Hannes Bartz , Lukas Holzbaur , Hedongliang Liu , Sven Puchinger , Julian Renner , Antonia Wachter-Zeh