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We study networks constructed from gene expression data obtained from many types of cancers. The networks are constructed by connecting vertices that belong to each others' list of K-nearest-neighbors, with K being an a priori selected…

Soft Condensed Matter · Physics 2009-11-07 Himanshu Agrawal

In several network problems the optimum behavior of the agents (i.e., the nodes of the network) is not known before deployment. Furthermore, the agents might be required to adapt, i.e. change their behavior based on the environment…

Neural and Evolutionary Computing · Computer Science 2020-12-22 Anil Yaman , Giovanni Iacca

The study of complex networks has been one of the most active fields in science in recent decades. Spectral properties of networks (or graphs that represent them) are of fundamental importance. Researchers have been investigating these…

Combinatorics · Mathematics 2018-09-25 Daniel Montealegre , Van Vu

We study the structural characteristics of complex networks using the representative eigenvectors of the adjacent matrix. The probability distribution function of the components of the representative eigenvectors are proposed to describe…

Physics and Society · Physics 2015-05-30 Guimei Zhu , Huijie Yang , Chuanyang Yin , Baowen Li

Localization phenomena permeate many branches of physics playing a fundamental role on dynamical processes evolving on heterogeneous networks. These localization analyses are frequently grounded, for example, on eigenvectors of adjacency or…

Physics and Society · Physics 2020-11-24 Diogo H. Silva , Silvio C. Ferreira

Eigenvector centrality is a common measure of the importance of nodes in a network. Here we show that under common conditions the eigenvector centrality displays a localization transition that causes most of the weight of the centrality to…

Social and Information Networks · Computer Science 2015-01-06 Travis Martin , Xiao Zhang , M. E. J. Newman

In this paper, we propose an evolving network model growing fast in units of module, based on the analysis of the evolution characteristics in real complex networks. Each module is a small-world network containing several interconnected…

Physics and Society · Physics 2011-10-11 Zou Zhi-Yun , Liu Peng , Lei Li , Gao Jian-Zhi

We analyze the gene expression data of Zebrafish under the combined framework of complex networks and random matrix theory. The nearest neighbor spacing distribution of the corresponding matrix spectra follows random matrix predictions of…

Biological Physics · Physics 2015-06-11 S. Jalan , C. Y. Ung , J. Bhojwani , B. Li , L. Zhang , S. H. Lan , Z. Gong

We analyse the eigenvectors of the adjacency matrix of a random inhomogeneous graph constructed from a specified degree sequence. We assume that the empirical degree sequence has bounded mean and variance. We show that near the edges of the…

Probability · Mathematics 2026-04-14 Thomas Buc-d'Alché , Antti Knowles

Information networks are ubiquitous and are ideal for modeling relational data. Networks being sparse and irregular, network embedding algorithms have caught the attention of many researchers, who came up with numerous embeddings algorithms…

Machine Learning · Computer Science 2020-09-25 Junshan Wang , Yilun Jin , Guojie Song , Xiaojun Ma

With the emerging of new networks, such as wireless sensor networks, vehicle networks, P2P networks, cloud computing, mobile Internet, or social networks, the network dynamics and complexity expands from system design, hardware, software,…

Social and Information Networks · Computer Science 2013-05-07 Jianguo Ding , Pascal Bouvry

We model a system of networking agents that seek to optimize their centrality in the network while keeping their cost, the number of connections they are participating in, low. Unlike other game-theory based models for network evolution,…

Populations and Evolution · Quantitative Biology 2007-05-23 Petter Holme , Gourab Ghoshal

The goal of this thesis is to develop the optimisation and generalisation theoretic foundations of learning in artificial neural networks. On optimisation, a new theoretical framework is proposed for deriving architecture-dependent…

Neural and Evolutionary Computing · Computer Science 2022-10-20 Jeremy Bernstein

The loss surface of deep neural networks has recently attracted interest in the optimization and machine learning communities as a prime example of high-dimensional non-convex problem. Some insights were recently gained using spin glass…

Machine Learning · Statistics 2017-06-05 C. Daniel Freeman , Joan Bruna

Edge sampling is an important topic in network analysis. It provides a natural way to reduce network size while retaining desired features of the original network. Sampling methods that only use local information are common in practice as…

Statistics Theory · Mathematics 2020-08-12 Can M. Le

The spectrum of the nonbacktracking matrix associated to a network is known to contain fundamental information regarding percolation properties of the network. Indeed, the inverse of its leading eigenvalue is often used as an estimate for…

Physics and Society · Physics 2025-01-30 James Martin , Tim Rogers , Luca Zanetti

Genetic regulation is a key component in development, but a clear understanding of the structure and dynamics of genetic networks is not yet at hand. In this paper we investigate these properties within an artificial genome model originally…

Molecular Networks · Quantitative Biology 2009-08-26 Thimo Rohlf , Christopher R. Winkler

Growing synthetic networks that follow power law distributions of a node's degree often involves adding one node at a time. Each node is added to the network with a fixed amount of edges and those edges are frozen for all future time steps.…

Physics and Society · Physics 2026-01-27 Justin Downes

We study an evolutionary algorithm that locally adapts thresholds and wiring in Random Threshold Networks, based on measurements of a dynamical order parameter. A control parameter $p$ determines the probability of threshold adaptations vs.…

Disordered Systems and Neural Networks · Physics 2009-11-13 Thimo Rohlf

Network embeddings learn to represent nodes as low-dimensional vectors to preserve the proximity between nodes and communities of the network for network analysis. The temporal edges (e.g., relationships, contacts, and emails) in dynamic…

Social and Information Networks · Computer Science 2019-06-25 Chuanchang Chen , Yubo Tao , Hai Lin