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Small disturbances can trigger functional breakdowns in complex systems. A challenging task is to infer the structural cause of a disturbance in a networked system, soon enough to prevent a catastrophe. We present a graph neural network…

Physics and Society · Physics 2020-06-11 Edward Laurence , Charles Murphy , Guillaume St-Onge , Xavier Roy-Pomerleau , Vincent Thibeault

Network science has become a powerful tool to describe the structure and dynamics of real-world complex physical, biological, social, and technological systems. Largely built on empirical observations to tackle heterogeneous, temporal, and…

Physics and Society · Physics 2021-04-28 Gerardo Iñiguez , Federico Battiston , Márton Karsai

A central issue in the study of large complex network systems, such as power grids, financial networks, and ecological systems, is to understand their response to dynamical perturbations. Recent studies recognize that many real networks…

Adaptation and Self-Organizing Systems · Physics 2022-07-26 Chao Duan , Takashi Nishikawa , Deniz Eroglu , Adilson E. Motter

The rapid development of network science and technologies depends on shareable datasets. Currently, there is no standard practice for reporting and sharing network datasets. Some network dataset providers only share links, while others…

Social and Information Networks · Computer Science 2022-06-09 Xinyi Zheng , Ryan A. Rossi , Nesreen Ahmed , Dominik Moritz

In this article, a framework for defining and analysing a family of graphs or networks from symbolic music information is discussed. Such graphs concern different types of elements, such as pitches, chords and rhythms, and the relations…

Social and Information Networks · Computer Science 2024-04-24 Alberto Alcalá-Alvarez , Pablo Padilla-Longoria

Complex systems are characterized by many interacting units that give rise to emergent behavior. A particularly advantageous way to study these systems is through the analysis of the networks that encode the interactions among the system's…

Physics and Society · Physics 2019-03-21 Alberto Aleta , Yamir Moreno

Pathophysiolpgical modelling of brain systems from microscale to macroscale remains difficult in group comparisons partly because of the infeasibility of modelling the interactions of thousands of neurons at the scales involved. Here, to…

Neurons and Cognition · Quantitative Biology 2026-01-30 Kang You , Gary Green , Jian Zhang

This work presents the current collection of mathematical models related to neural networks and proposes a new family of such with extended structure and dynamics in order to attain a selection of cognitive capabilities. It starts by…

Neural and Evolutionary Computing · Computer Science 2023-01-10 Plamen Dimitrov

Typically, for analysing and modelling social phenomena, networks are a convenient framework that allows for the representation of the interconnectivity of individuals. These networks are often considered transmission structures for…

Social and Information Networks · Computer Science 2025-03-31 Damian Serwata , Mateusz Nurek , Radoslaw Michalski

Artificial neural networks (ANNs) are essential tools in machine learning that have drawn increasing attention in neuroscience. Besides offering powerful techniques for data analysis, ANNs provide a new approach for neuroscientists to build…

Neurons and Cognition · Quantitative Biology 2020-09-25 Guangyu Robert Yang , Xiao-Jing Wang

Many real-world networks, including nervous systems, exhibit meso-scale structure. This means that their elements can be grouped into meaningful sub-networks. In general, these sub-networks are unknown ahead of time and must be "discovered"…

Neurons and Cognition · Quantitative Biology 2020-11-16 Richard F. Betzel

Machine learning provides a valuable tool for analyzing high-dimensional functional neuroimaging data, and is proving effective in predicting various neurological conditions, psychiatric disorders, and cognitive patterns. In functional…

Machine Learning · Computer Science 2024-11-25 Anwar Said , Roza G. Bayrak , Tyler Derr , Mudassir Shabbir , Daniel Moyer , Catie Chang , Xenofon Koutsoukos

The science of networks has revolutionised research into the dynamics of interacting elements. It could be argued that epidemiology in particular has embraced the potential of network theory more than any other discipline. Here we review…

High-throughput methods for yielding the set of connections in a neural system, the connectome, are now being developed. This tutorial describes ways to analyze the topological and spatial organization of the connectome at the macroscopic…

Neurons and Cognition · Quantitative Biology 2011-12-23 Marcus Kaiser

Brain disorders in the early and late life of humans potentially share pathological alterations in brain functions. However, the key evidence from neuroimaging data for pathological commonness remains unrevealed. To explore this hypothesis,…

Artificial Intelligence · Computer Science 2023-02-24 Mianxin Liu , Jingyang Zhang , Yao Wang , Yan Zhou , Fang Xie , Qihao Guo , Feng Shi , Han Zhang , Qian Wang , Dinggang Shen

Artificial neural networks are simple and efficient machine learning tools. Defined originally in the traditional setting of simple vector data, neural network models have evolved to address more and more difficulties of complex real world…

Neural and Evolutionary Computing · Computer Science 2012-10-26 Marie Cottrell , Madalina Olteanu , Fabrice Rossi , Joseph Rynkiewicz , Nathalie Villa-Vialaneix

Using different sources of information to support automated extracting of relations between biomedical concepts contributes to the development of our understanding of biological systems. The primary comprehensive source of these relations…

Computation and Language · Computer Science 2020-09-21 Diana Sousa , Andre Lamurias , Francisco M. Couto

A fundamental challenge in neuroscience is to understand what structure in the world is represented in spatially distributed patterns of neural activity from multiple single-trial measurements. This is often accomplished by learning a…

Neural and Evolutionary Computing · Computer Science 2020-07-01 Jesse A. Livezey , Kristofer E. Bouchard , Edward F. Chang

This short paper examines diagrams describing neural network systems in academic conference proceedings. Many aspects of scholarly communication are controlled, particularly with relation to text and formatting, but often diagrams are not…

Human-Computer Interaction · Computer Science 2021-05-03 Guy Clarke Marshall , Caroline Jay , Andre Freitas

Control of complex processes is a major goal of network analyses. Most approaches to control nonlinearly coupled systems require the network topology and/or network dynamics. Unfortunately, neither the full set of participating nodes nor…

Molecular Networks · Quantitative Biology 2014-12-23 Jason Shulman , Frank Malatino , Alexander Mo , Killian Ryan , Gemunu H. Gunaratne