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Understanding the rules underlying organismal development is a major unsolved problem in biology. Each cell in a developing organism responds to signals in its local environment by dividing, excreting, consuming, or reorganizing, yet how…

Cell Behavior · Quantitative Biology 2025-08-20 Ramya Deshpande , Francesco Mottes , Ariana-Dalia Vlad , Michael P. Brenner , Alma dal Co

Biofilm accumulation in the porous media can cause plugging and change many physical properties of porous media. Targeted bioplugging may have significant applications for industrial processes. A deeper understanding of the relative…

Turing instabilities for a two species reaction-diffusion systems is studied under anisotropic diffusion. More specifically, the diffusion constants which characterize the ability of the species to relocate in space are direction sensitive.…

Statistical Mechanics · Physics 2015-09-30 Daniel M. Busiello , Gwendoline Planchon , Malbor Asllani , Timoteo Carletti , Duccio Fanelli

Fiber-reinforcement is a universal feature of many biological tissues. It involves the interplay between fiber stiffness, fiber orientation, and the elastic properties of the matrix, influencing pattern formation and evolution in layered…

Soft Condensed Matter · Physics 2025-04-29 Yang Liu , Rui-Cheng Liu , Wanyu Ma , Alain Goriely

We investigate an electromagnetic instability in two-dimensional materials arising from an anisotropy of the Fermi surface, utilizing a kinetic model accounting for the effects of the values of temperature, chemical potential and anisotropy…

Materials Science · Physics 2025-06-27 Diogo Simões , Hugo Terças , Jorge Ferreira

We investigate the chemical dissolution of porous media using a network model in which the system is represented as a series of interconnected pipes with the diameter of each segment increasing in proportion to the local reactant…

Fluid Dynamics · Physics 2015-06-12 Agnieszka Budek , Piotr Szymczak

Cellular patterns formed by self-organization of dislocations are a most conspicuous feature of dislocation microstructure evolution during plastic deformation. To elucidate the physical mechanisms underlying dislocation cell structure…

Materials Science · Physics 2020-07-20 Ronghai Wu , Michael Zaiser

Monolayers of growing bacteria, confined within channel geometries, exhibit self-organization into a highly aligned laminar state along the axis of the channel. Although this phenomenon has been observed in experiments and simulations under…

Soft Condensed Matter · Physics 2024-11-04 Blake Langeslay , Will Fahy , Gabriel Juarez

We analyze the occurrence of in-plane anisotropy in the electronic, magnetic, elastic and transport properties of more than one thousand 2D materials from the C2DB database. We identify hundreds of anisotropic materials and classify them…

Materials Science · Physics 2020-09-09 Luca Vannucci , Urko Petralanda , Asbjørn Rasmussen , Thomas Olsen , Kristian S. Thygesen

Bacteria frequently colonize natural microcavities such as gut crypts, plant apoplasts, and soil pores. Recent studies have shown that the physical structure of these spaces plays a crucial role in shaping the stability and resilience of…

Populations and Evolution · Quantitative Biology 2025-03-28 Valentin Slepukhin , Víctor Peris Yagüe , Christian Westendorf , Birgit Koch , Oskar Hallatschek

Microscopic organisms, such as bacteria, have the ability of colonizing surfaces and developing biofilms that can determine diseases and infections. Most bacteria secrete a significant amount of extracellular polymer substances that are…

Biological Physics · Physics 2021-05-19 Francisco Javier Lobo-Cabrera , Alessandro Patti , Fernando Govantes , Alejandro Cuetos

The mechanical, optical, and chemical properties of a wide variety of soft materials are enabled and constrained by their bulk structure. How this structure emerges at small system sizes during self-assembly has been the subject of decades…

Soft Condensed Matter · Physics 2024-12-09 Jennifer E. Doyle , Maya M. Martirossyan , Julia Dshemuchadse , Erin G. Teich

Bacteria can spontaneously develop collective motions by aligning their motions in dense systems. Here, we show that bacteria can also respond collectively to an alternating electrical field and form dynamic clusters oscillating at the same…

Soft Condensed Matter · Physics 2022-10-11 Mei Mei Bao , Isaiah Eze Igwe , Kang Chen , Tian Hui Zhang

Cell walls define a cell shape in bacteria. They are rigid to resist large internal pressures, but remarkably plastic to adapt to a wide range of external forces and geometric constraints. Currently, it is unknown how bacteria maintain…

Soft Condensed Matter · Physics 2014-05-01 Ariel Amir , Farinaz Babaeipour , Dustin B. McIntosh , David R. Nelson , Suckjoon Jun

Guided movement in response to slowly diffusing polymeric trails provides a unique mechanism for self-organization of some microorganisms. To elucidate how this signaling route leads to microcolony formation, we experimentally probe the…

Cell Behavior · Quantitative Biology 2016-10-26 Anatolij Gelimson , Kun Zhao , Calvin K. Lee , W. Till Kranz , Gerard C. L. Wong , Ramin Golestanian

We present a simple model based on a reaction-diffusion equation to explain pattern formation in a multicellular bacterium (Streptomyces). We assume competition for resources as the basic mechanism that leads to pattern formation; in…

Biological Physics · Physics 2007-05-23 M. Bezzi , A. Ciliberto , A. Mengoni

The topological organisation of cells in a model of living tissue (the crypt of intestinal epithelium) is identical to the topological organisation of atoms in carbon nanotubes. The existing models of growth of these two structures contain…

Mesoscale and Nanoscale Physics · Physics 2011-06-29 Michael Pyshnov , Sergei Fedorov

The ability to predict the morphology of crystals formed by chemical reactions is of fundamental importance for the shape-controlled synthesis of nanostructures. Based on the atomistic mechanism for crystal growth under different driving…

Materials Science · Physics 2009-11-13 B. Viswanath , Paromita Kundu , B. Mukherjee , N. Ravishankar

Spinodal decomposition process in the system of immiscible PbTe/CdTe compounds is analyzed as an example of a self-organizing structure. The immiscibility of the constituents leads to the observed morphological transformations like…

Living cells exhibit a complex organization comprising numerous compartments, among which are RNA- and protein-rich membraneless, liquid-like organelles known as biomolecular condensates. Energy-consuming processes regulate their formation…

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