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Machine learning (ML) approaches have been used to develop highly accurate and efficient applications in many fields including bio-medical science. However, even with advanced ML techniques, cancer classification using gene expression data…

Genomics · Quantitative Biology 2023-05-10 Mahmood Khalsan , Mu Mu , Eman Salih Al-Shamery , Lee Machado , Suraj Ajit , Michael Opoku Agyeman

Gene expression analysis is a critical method for cancer classification, enabling precise diagnoses through the identification of unique molecular signatures associated with various tumors. Identifying cancer-specific genes from gene…

Quantitative Methods · Quantitative Biology 2024-10-11 Farzana Tabassum , Sabrina Islam , Siana Rizwan , Masrur Sobhan , Tasnim Ahmed , Sabbir Ahmed , Tareque Mohmud Chowdhury

Many machine learning models have been proposed to classify phenotypes from gene expression data. In addition to their good performance, these models can potentially provide some understanding of phenotypes by extracting explanations for…

Genomics · Quantitative Biology 2024-02-05 Myriam Bontonou , Anaïs Haget , Maria Boulougouri , Benjamin Audit , Pierre Borgnat , Jean-Michel Arbona

This paper present a strong data mining method based on rough set, which can realize feature selection, classification and knowledge representation at the same time. Rough set has good interpretability, and is a popular method for feature…

Machine Learning · Computer Science 2022-01-13 Shuyin Xia , Xinyu Bai , Guoyin Wang , Deyu Meng , Xinbo Gao , Zizhong Chen , Elisabeth Giem

It has been challenging to identify ferrograph images with a small dataset and various scales of wear particle. A novel model is proposed in this study to cope with these challenging problems. For the problem of insufficient samples, we…

Computer Vision and Pattern Recognition · Computer Science 2020-10-15 Peng Peng , Jiugen Wang

Accurately identifying cancer samples is crucial for precise diagnosis and effective patient treatment. Traditional methods falter with high-dimensional and high feature-to-sample count ratios, which are critical for classifying cancer…

Machine Learning · Computer Science 2025-01-14 Tareque Mohmud Chowdhury , Farzana Tabassum , Sabrina Islam , Abu Raihan Mostofa Kamal

Subsampling of received wireless signals is important for relaxing hardware requirements as well as the computational cost of signal processing algorithms that rely on the output samples. We propose a subsampling technique to facilitate the…

Signal Processing · Electrical Eng. & Systems 2020-05-12 Sharan Ramjee , Shengtai Ju , Diyu Yang , Xiaoyu Liu , Aly El Gamal , Yonina C. Eldar

The selection of features is an essential data preprocessing stage in data mining. The core principle of feature selection seems to be to pick a subset of possible features by excluding features with almost no predictive information as well…

Machine Learning · Computer Science 2020-08-11 Mehrdad Rostami , Kamal Berahmand , Saman Forouzandeh

We propose a novel methodology for feature screening in clustering massive datasets, in which both the number of features and the number of observations can potentially be very large. Taking advantage of a fusion penalization based convex…

Methodology · Statistics 2017-10-05 Trambak Banerjee , Gourab Mukherjee , Peter Radchenko

We develop a model-based methodology for integrating gene-set information with an experimentally-derived gene list. The methodology uses a previously reported sampling model, but takes advantage of natural constraints in the…

Methodology · Statistics 2015-06-02 Zhishi Wang , Qiuling He , Bret Larget , Michael A. Newton

Gene panel selection aims to identify the most informative genomic biomarkers in label-free genomic datasets. Traditional approaches, which rely on domain expertise, embedded machine learning models, or heuristic-based iterative…

Genomics · Quantitative Biology 2025-09-12 Meng Xiao , Weiliang Zhang , Xiaohan Huang , Hengshu Zhu , Min Wu , Xiaoli Li , Yuanchun Zhou

Coverage of image features play an important role in many vision algorithms since their distribution affect the estimated homography. This paper presents a Genetic Algorithm (GA) in order to select the optimal set of features yielding…

Computer Vision and Pattern Recognition · Computer Science 2017-04-21 Erkan Bostanci

New technologies and equipment allow for mass treatment of samples and research teams share acquired data on an always larger scale. In this context scientists are facing a major data exploitation problem. More precisely, using these data…

Quantitative Methods · Quantitative Biology 2009-07-02 Julie Bourbeillon , Catherine Garbay , Françoise Giroud

Microarray data consists of mRNA expression levels of thousands of genes under certain conditions. A difference in the expression level of a gene at two different conditions/phenotypes, such as cancerous versus non-cancerous, one subtype of…

Biological Physics · Physics 2009-11-09 Wentian Li

The high dimensionality of hyperspectral images often imposes a heavy computational burden for image processing. Therefore, dimensionality reduction is often an essential step in order to remove the irrelevant, noisy and redundant bands.…

Computer Vision and Pattern Recognition · Computer Science 2022-11-01 Asma Elmaizi , Maria Merzouqi , Elkebir Sarhrouni , Ahmed hammouch , Chafik Nacir

Cancer is fundamentally a genetic disease characterized by genetic and epigenetic alterations that disrupt normal gene expression, leading to uncontrolled cell growth and metastasis. High-dimensional microarray datasets pose challenges for…

Quantitative Methods · Quantitative Biology 2025-06-03 Sulaiman khan , Muhammad Ahmad , Fida Ullah , Carlos Aguilar Ibañez , José Eduardo Valdez Rodriguez

Feature selection is a process of choosing a subset of relevant features so that the quality of prediction models can be improved. An extensive body of work exists on information-theoretic feature selection, based on maximizing Mutual…

Machine Learning · Computer Science 2016-12-05 Jilin Wu , Soumyajit Gupta , Chandrajit Bajaj

This paper proposes a novel bin picking framework, two-stage grasping, aiming at precise grasping of cluttered small objects. Object density estimation and rough grasping are conducted in the first stage. Fine segmentation, detection,…

Robotics · Computer Science 2023-05-09 Hanwen Cao , Jianshu Zhou , Junda Huang , Yichuan Li , Ng Cheng Meng , Rui Cao , Qi Dou , Yunhui Liu

In the past decades, the rapid growth of computer and database technologies has led to the rapid growth of large-scale datasets. On the other hand, data mining applications with high dimensional datasets that require high speed and accuracy…

Machine Learning · Computer Science 2020-08-11 Mehrdad Rostami , Kamal Berahmand , Saman Forouzandeh

The expression levels of many thousands of genes can be measured simultaneously by DNA microarrays (chips). This novel experimental tool has revolutionized research in molecular biology and generated considerable excitement. A typical…

Biological Physics · Physics 2007-05-23 Eytan Domany