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Connectomics and network neuroscience offer quantitative scientific frameworks for modeling and analyzing networks of structurally and functionally interacting neurons, neuronal populations, and macroscopic brain areas. This shift in…

Neurons and Cognition · Quantitative Biology 2020-10-06 Richard Betzel

Over the recent years, Graph Neural Networks have become increasingly popular in network analytic and beyond. With that, their architecture noticeable diverges from the classical multi-layered hierarchical organization of the traditional…

Machine Learning · Computer Science 2021-05-17 Stanislav Sobolevsky

With the recent explosion of publicly available biological data, the analysis of networks has gained significant interest. In particular, recent promising results in Neuroscience show that the way neurons and areas of the brain are…

Social and Information Networks · Computer Science 2015-11-17 Umberto Esposito , Eleni Vasilaki

The brain's structural connectome supports signal propagation between neuronal elements, shaping diverse coactivation patterns that can be captured as functional connectivity. While the link between structure and function remains an ongoing…

Neurons and Cognition · Quantitative Biology 2022-07-11 Yaqian Yang , Zhiming Zheng , Longzhao Liu , Hongwei Zheng , Yi Zhen , Yi Zheng , Xin Wang , Shaoting Tang

The human brain is a complex system defined by multi-way, higher-order interactions invisible to traditional pairwise network models. Although a diverse array of analytical methods has been developed to address this shortcoming, the field…

Quantitative Methods · Quantitative Biology 2025-11-11 Mohamma Reza Salehi , Ali BashirGonbadi , Hamid Soltanian-Zadeh

Hypergraphs provide a natural representation for many real world datasets. We propose a novel framework, HNHN, for hypergraph representation learning. HNHN is a hypergraph convolution network with nonlinear activation functions applied to…

Machine Learning · Computer Science 2020-07-15 Yihe Dong , Will Sawin , Yoshua Bengio

Modern sociology has profoundly uncovered many convincing social criteria for behavioural analysis. Unfortunately, many of them are too subjective to be measured and presented in online social networks. On the other hand, data mining…

Social and Information Networks · Computer Science 2023-01-09 Xiangguo Sun , Hong Cheng , Bo Liu , Jia Li , Hongyang Chen , Guandong Xu , Hongzhi Yin

The growing interest in hypergraph neural networks (HGNNs) is driven by their capacity to capture the complex relationships and patterns within hypergraph structured data across various domains, including computer vision, complex networks,…

Machine Learning · Computer Science 2025-03-12 Murong Yang , Xin-Jian Xu

Finding densely connected subsets of vertices in an unsupervised setting, called clustering or community detection, is one of the fundamental problems in network science. The edge clustering approach instead detects communities by…

Social and Information Networks · Computer Science 2026-03-02 Ryan DeWolfe , François Théberge

Understanding the relationship between the dynamics of neural processes and the anatomical substrate of the brain is a central question in neuroscience. On the one hand, modern neuroimaging technologies, such as diffusion tensor imaging,…

Understanding how brain structure and function interact is key to explaining intelligence yet modeling them jointly is challenging as the structural and functional connectome capture complementary aspects of organization. We introduced…

Computer Vision and Pattern Recognition · Computer Science 2026-04-01 Badhan Mazumder , Sir-Lord Wiafe , Aline Kotoski , Vince D. Calhoun , Dong Hye Ye

Endowing brain anatomy, dynamics, and function with a network structure is becoming standard in neuroscience. In its simplest form, a network is a collection of units and relationships between them. The pattern of relations among the units…

Neurons and Cognition · Quantitative Biology 2025-07-22 David Papo , Javier M. Buldú

Hypergraph is a powerful representation in several computer vision, machine learning and pattern recognition problems. In the last decade, many researchers have been keen to develop different hypergraph models. In contrast, no much…

Computer Vision and Pattern Recognition · Computer Science 2014-10-27 Sheng Huang , Ahmed Elgammal , Dan Yang

Recent experimental advances are producing an avalanche of data on both neural connectivity and neural activity. To take full advantage of these two emerging datasets we need a framework that links them, revealing how collective neural…

Neurons and Cognition · Quantitative Biology 2020-02-27 Gabriel Koch Ocker , Krešimir Josić , Eric Shea-Brown , Michael A. Buice

We investigate the training dynamics of deep classifiers by examining how hierarchical relationships between classes evolve during training. Through extensive experiments, we argue that the learning process in classification problems can be…

Artificial Intelligence · Computer Science 2025-02-18 Roman Malashin , Valeria Yachnaya , Alexander Mullin

The brain is immensely complex, with diverse components and dynamic interactions building upon one another to orchestrate a wide range of functions and behaviors. Understanding patterns of these complex interactions and how they are…

Neurons and Cognition · Quantitative Biology 2024-08-06 Suman Kulkarni , Dani S. Bassett

Graphs have been utilized as a powerful tool to model pairwise relationships between people or objects. Such structure is a special type of a broader concept referred to as hypergraph, in which each hyperedge may consist of an arbitrary…

Social and Information Networks · Computer Science 2020-06-15 Manh Tuan Do , Se-eun Yoon , Bryan Hooi , Kijung Shin

The clustering coefficient quantifies the abundance of connected triangles in a network and is a major descriptive statistics of networks. For example, it finds an application in the assessment of small-worldness of brain networks, which is…

Physics and Society · Physics 2018-06-28 Naoki Masuda , Michiko Sakaki , Takahiro Ezaki , Takamitsu Watanabe

The threshold model has been widely adopted as a prototype for studying contagion processes on social networks. In this paper, we consider individual interactions in groups of three or more vertices and study the threshold model on…

Physics and Society · Physics 2022-03-01 Xin-Jian Xu , Shuang He , Li-Jie Zhang

Hypergraphs, encoding structured interactions among any number of system units, have recently proven a successful tool to describe many real-world biological and social networks. Here we propose a framework based on statistical inference to…

Social and Information Networks · Computer Science 2022-12-01 Martina Contisciani , Federico Battiston , Caterina De Bacco