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This article describes a new, fully adaptive Particle-Multiple-Mesh numerical simulation code developed primarily for simulations of small regions (such as a group of galaxies) in a cosmological context. It integrates the equations of…

Astrophysics · Physics 2009-10-28 Sergio Gelato , David F. Chernoff , Ira Wasserman

We present a computational framework for modeling large-scale particle-laden flows in complex domains with the goal of enabling simulations in medical-image derived patient specific geometries. The framework is based on a volume-filtered…

Fluid Dynamics · Physics 2023-11-28 Abhilash Reddy Malipeddi , C. Alberto Figueroa , Jesse Capecelatro

Understanding how pore structure influences flow and transport behaviour in granular materials is essential for addressing a wide range of geotechnical, hydraulic, and environmental challenges. These processes are largely shaped by the…

Soft Condensed Matter · Physics 2025-12-01 Jie Qi , Wenbin Fei , Guillermo A. Narsilio

This paper studies the boundary behaviour at mechanical equilibrium at the ends of a finite interval of a class of systems of interacting particles with monotone decreasing repulsive force. Our setting covers pile-ups of dislocations,…

Analysis of PDEs · Mathematics 2016-09-13 Cameron Hall , Thomas Hudson , Patrick van Meurs

Phoretic colloids self-propel thanks to surface flows generated in response to surface gradients (thermal, electrical, or chemical), that are self-induced and/or generated by other particles. Here we present a scalable and versatile…

Soft Condensed Matter · Physics 2024-07-29 Blaise Delmotte , Florencio Balboa Usabiaga

The Material Point Method (MPM) is a hybrid Eulerian-Lagrangian approach capable of simulating large deformation problems of history-dependent materials. While the MPM can represent complex and evolving material domains by using Lagrangian…

Geophysics · Physics 2019-10-01 Ezra Y. S. Tjung , Shyamini Kularathna , Krishna Kumar , Kenichi Soga

The use of molecular dynamics (MD) simulations has led to promising results to unravel the atomistic origins of adhesive wear, and in particular for the onset of wear at nanoscale surface asperities. However, MD simulations come with a high…

Soft Condensed Matter · Physics 2022-06-29 Son Pham-Ba , Jean-François Molinari

We present a boundary-spheropolygon element method (BSEM), that combines the boundary integral method (BIM) and the spheropolygon-based discrete element method (SEM). The interaction between particles is simulated via the SEM, and the…

Soft Condensed Matter · Physics 2019-02-06 Yupeng Jiang , Hans J. Herrmann , Fernando Alonso-Marroquin

The structural response of masonry arches is strongly dominated by the arch geometry, the stone block dimensions and the interaction with backfill material or surrounding walls. Due to their intrinsic discontinuous nature, the nonlinear…

Computational Engineering, Finance, and Science · Computer Science 2019-07-30 F. Cannizzaro , B. Pantò , S. Caddemi , I. Caliò

The paper describes the coupling of the MercuryDPM discrete element method (DEM) code and the implementation of the kernel-independent fast multipole method (KIFMM). The combined simulation framework allows addressing the large class of…

Soft Condensed Matter · Physics 2025-12-11 Igor A. Ostanin

In this contribution, a finite element scheme to impose mixed boundary conditions without introducing Lagrange multipliers is presented for hyperbolic systems described as port-Hamiltonian systems. The strategy relies on finite element…

Numerical Analysis · Mathematics 2026-01-23 S. D. M. de Jong , A. Brugnoli , R. Rashad , Y. Zhang , S. Stramigioli

Lateral microsegregation in a monolayer of a binary mixture of particles or macromolecules is studied by MD simulations in a generic model with the interacting potentials inspired by effective interactions in biological or soft-matter…

Soft Condensed Matter · Physics 2025-05-26 M. Litniewski , W. T. Gozdz nd A. Ciach

Multiscale modelling aims to systematically construct macroscale models of materials with fine microscale structure. However, macroscale boundary conditions are typically not systematically derived, but rely on heuristic arguments,…

Dynamical Systems · Mathematics 2019-11-18 Chen Chen , A. J. Roberts , J. E. Bunder

Advancements in computing power have made it possible to numerically simulate large-scale fluid-mechanical and/or particulate systems, many of which are integral to core industrial processes. Among the different numerical methods available,…

Machine Learning · Computer Science 2025-02-28 Benedikt Alkin , Tobias Kronlachner , Samuele Papa , Stefan Pirker , Thomas Lichtenegger , Johannes Brandstetter

The structure and function of biological molecules are strongly influenced by the water and dissolved ions that surround them. This aqueous solution (solvent) exerts significant electrostatic forces in response to the biomolecule's…

Numerical Analysis · Mathematics 2015-12-29 Matthew G. Knepley , Jaydeep P. Bardhan

Capturing the interaction between objects that have an extreme difference in Young s modulus or geometrical scale is a highly challenging topic for numerical simulation. One of the fundamental questions is how to build an accurate…

Computational Engineering, Finance, and Science · Computer Science 2019-10-01 Yupeng Jiang , Minchen Li , Chenfanfu Jiang , Fernando Alonso-marroquin

The Particle-Particle-Particle-Mesh algorithm elegantly extends the standard Particle-In-Cell scheme by direct summation of interaction that happens over distances below or around mesh size. Generally, this allows for a more accurate…

Computational Physics · Physics 2021-04-19 Tim Wyssling , Andreas Adelmann

We study the particle-scale dynamics that give rise to bulk flow behaviours of highly concentrated particle-fluid mixtures using discrete element method (DEM) simulations. We utilize boundary conditions of a stress-controlled shear cell and…

Soft Condensed Matter · Physics 2025-09-26 Teng Man , Herbert Huppert , Qingfeng Feng , Kimberly Hill

The empirical and particle force-based models of granular segregation due to density differences among the species are compared in this work. Dependency of the empirical segregation parameters on the initial configuration, the observation…

Soft Condensed Matter · Physics 2023-10-20 Soniya Kumawat , Vishnu Kumar Sahu , Anurag Tripathi

Deformable elastic bodies in viscous and viscoelastic media constitute a large portion of synthetic and biological complex fluids. We present a parallelized 3D-simulation methodology which fully resolves the momentum balance in the solid…

Computational Physics · Physics 2019-03-11 Amir Saadat , Chris J. Guido , Gianluca Iaccarino , Eric S. G. Shaqfeh