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Two types of connected chord diagrams with chord endpoints lying in a collection of ordered and oriented real segments are considered here: the real segments may contain additional bivalent vertices in one model but not in the other. In the…

Combinatorics · Mathematics 2015-12-15 N. V. Alexeev , J. E. Andersen , R. C. Penner , P. G. Zograf

We introduce and study the Hermitian matrix model with potential V(x)=x^2/2-stx/(1-tx), which enumerates the number of linear chord diagrams of fixed genus with specified numbers of backbones generated by s and chords generated by t. For…

High Energy Physics - Theory · Physics 2017-05-23 Jørgen E. Andersen , Leonid O. Chekhov , R. C. Penner , Christian M. Reidys , Piotr Sułkowski

Maximal chord diagrams up to all isomorphisms are enumerated. The enumerating formula is based on a bijection between rooted one-vertex one-face maps on locally orientable surfaces and a certain class of symmetric chord diagrams. This…

Combinatorics · Mathematics 2018-05-15 Evgeniy Krasko

The topological recursion of Eynard and Orantin governs a variety of problems in enumerative geometry and mathematical physics. The recursion uses the data of a spectral curve to define an infinite family of multidifferentials. It has been…

Geometric Topology · Mathematics 2013-12-25 Norman Do , David Manescu

We write the loop equations for the $\beta$ two-matrix model, and we propose a topological recursion algorithm to solve them, order by order in a small parameter. We find that to leading order, the spectral curve is a "quantum" spectral…

Mathematical Physics · Physics 2015-05-28 Michel Bergère , Bertrand Eynard , Olivier Marchal , Aleix Prats-Ferrer

We enumerate chord diagrams without loops and without both loops and parallel chords. We show that the former ones describe Hamiltonian paths in $n$-dimensional octahedrons. The latter ones are also known as shapes. For labelled diagrams we…

Combinatorics · Mathematics 2017-09-18 Evgeniy Krasko , Alexander Omelchenko

In this article, the enumeration of partial chord diagrams is discussed via matrix model techniques. In addition to the basic data such as the number of backbones and chords, we also consider the Euler characteristic, the backbone spectrum,…

We show that observables in QED-type theories can be realized in terms of a combinatorial structure called chord diagrams. One advantage of this combinatorial representation is that it simplifies the study of the asymptotic behavior of…

High Energy Physics - Theory · Physics 2025-01-10 Ali Assem Mahmoud

RNA molecules are known to form complex secondary structures including pseudoknots. A systematic framework for the enumeration, classification and prediction of secondary structures is critical to determine the biological significance of…

Biomolecules · Quantitative Biology 2025-12-24 Rayan Ibrahim , Allison H. Moore

A chord diagram consists of a circle, called the backbone, with line segments, called chords, whose endpoints are attached to distinct points on the circle. The genus of a chord diagram is the genus of the orientable surface obtained by…

Geometric Topology · Mathematics 2016-04-15 Jonathan Burns , Nataša Jonoska , Masahico Saito

This paper addresses the enumeration of rooted and unrooted hypermaps of a given genus. For rooted hypermaps the enumeration method consists of considering the more general family of multirooted hypermaps, in which darts other than the root…

Combinatorics · Mathematics 2018-06-22 Alain Giorgetti , Timothy R. S. Walsh

Topological orders can be used as media for topological quantum computing --- a promising quantum computation model due to its invulnerability against local errors. Conversely, a quantum simulator, often regarded as a quantum computing…

Strongly Correlated Electrons · Physics 2017-03-01 Keren Li , Yidun Wan , Ling-Yan Hung , Tian Lan , Guilu Long , Dawei Lu , Bei Zeng , Raymond Laflamme

One of the principal obstacles on the way to quantum computers is the lack of distinguished basis in the space of unitary evolutions and thus the lack of the commonly accepted set of basic operations (universal gates). A natural choice,…

High Energy Physics - Theory · Physics 2018-02-13 D. Melnikov , A. Mironov , S. Mironov , A. Morozov , An. Morozov

In this paper we compute the bivariate generating function of $\gamma$-matchings over two backbones, filtered by the number of arcs and the topological genus. $\gamma$-matchings over two backbones are chord-diagrams, obtained via…

Combinatorics · Mathematics 2013-11-05 Benjamin Mingming Fu , Christian M. Reidys

Enumerating chemical graphs satisfying given constraints is a fundamental problem in mathematical and computational chemistry, and plays an essential part in a recently proposed framework for the inverse QSAR/QSPR. In this paper,…

Data Structures and Algorithms · Computer Science 2020-04-21 Kyousuke Yamashita , Ryuji Masui , Xiang Zhou , Chenxi Wang , Aleksandar Shurbevski , Hiroshi Nagamochi , Tatsuya Akutsu

Hybrid variational quantum algorithms (VQAs) are promising for solving practical problems such as combinatorial optimization, quantum chemistry simulation, quantum machine learning, and quantum error correction on noisy quantum computers.…

Topological data analysis (TDA) has emerged as a powerful tool for extracting meaningful insights from complex data. TDA enhances the analysis of objects by embedding them into a simplicial complex and extracting useful global properties…

Quantum Physics · Physics 2023-07-17 Massimiliano Incudini , Francesco Martini , Alessandra Di Pierro

We analyze the computational aspects of detecting topological order in a quantum many-body system. We contrast the widely used topological entanglement entropy with a recently introduced operational definition for topological order based on…

Quantum Physics · Physics 2025-05-09 Louis Fraatz , Amit Jamadagni , Hendrik Weimer

Directed acyclic graphs are the basic representation of the structure underlying Bayesian networks, which represent multivariate probability distributions. In many practical applications, such as the reverse engineering of gene regulatory…

Computation · Statistics 2013-11-15 Jack Kuipers , Giusi Moffa

We review a derivation of the numbers of RNA complexes of an arbitrary topology. These numbers are encoded in the free energy of the hermitian matrix model with potential V(x)=x^2/2-stx/(1-tx), where s and t are respective generating…

Quantitative Methods · Quantitative Biology 2017-05-23 Jørgen E. Andersen , Leonid O. Chekhov , R. C. Penner , Christian M. Reidys , Piotr Sułkowski
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