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Substring kernels are classical tools for representing biological sequences or text. However, when large amounts of annotated data are available, models that allow end-to-end training such as neural networks are often preferred. Links…

Machine Learning · Statistics 2019-10-18 Dexiong Chen , Laurent Jacob , Julien Mairal

In generalized graph signal processing (GGSP), the signal associated with each vertex in a graph is an element from a Hilbert space. In this paper, we study GGSP signal reconstruction as a kernel ridge regression (KRR) problem. By devising…

Signal Processing · Electrical Eng. & Systems 2023-08-15 Xingchao Jian , Wee Peng Tay , Yonina C. Eldar

We propose a novel random walk-based algorithm for unbiased estimation of arbitrary functions of a weighted adjacency matrix, coined universal graph random features (u-GRFs). This includes many of the most popular examples of kernels…

Machine Learning · Statistics 2024-05-27 Isaac Reid , Krzysztof Choromanski , Eli Berger , Adrian Weller

We introduce a kernel Lasso (kLasso) optimization that simultaneously accounts for spatial regularity and network sparsity to reconstruct spatial complex networks from data. Through a kernel function, the proposed approach exploits spatial…

Data Analysis, Statistics and Probability · Physics 2017-07-05 Jie Sun , Fernando J. Quevedo , Erik Bollt

Tree structured graphical models are powerful at expressing long range or hierarchical dependency among many variables, and have been widely applied in different areas of computer science and statistics. However, existing methods for…

Machine Learning · Statistics 2014-01-17 Le Song , Han Liu , Ankur Parikh , Eric Xing

We introduce the \emph{temporal graphlet kernel} for classifying dissemination processes in labeled temporal graphs. Such dissemination processes can be spreading (fake) news, infectious diseases, or computer viruses in dynamic networks.…

Social and Information Networks · Computer Science 2022-09-16 Lutz Oettershagen , Nils M. Kriege , Claude Jordan , Petra Mutzel

We present a general framework for studying harmonic analysis of functions in the settings of various emerging problems in the theory of diffusion geometry. The starting point of the now classical diffusion geometry approach is the…

Classical Analysis and ODEs · Mathematics 2016-07-18 Hrushikesh N. Mhaskar

Dealing with NP-hard problems, kernelization is a fundamental notion for polynomial-time data reduction with performance guarantees: in polynomial time, a problem instance is reduced to an equivalent instance with size upper-bounded by a…

Data Structures and Algorithms · Computer Science 2022-12-26 Matthias Bentert , René van Bevern , Till Fluschnik , André Nichterlein , Rolf Niedermeier

One approach to improving the running time of kernel-based machine learning methods is to build a small sketch of the input and use it in lieu of the full kernel matrix in the machine learning task of interest. Here, we describe a version…

Machine Learning · Statistics 2015-11-10 Ahmed El Alaoui , Michael W. Mahoney

Identifying coherent spatiotemporal patterns generated by complex dynamical systems is a central problem in many science and engineering disciplines. Here, we combine ideas from the theory of operator-valued kernels with delay-embedding…

Data Analysis, Statistics and Probability · Physics 2018-05-24 Dimitrios Giannakis , Joanna Slawinska , Abbas Ourmazd , Zhizhen Zhao

Molecular property calculations are the bedrock of chemical physics. High-fidelity \textit{ab initio} modeling techniques for computing the molecular properties can be prohibitively expensive, and motivate the development of…

Machine Learning · Computer Science 2022-11-28 Hatem Helal , Jesun Firoz , Jenna Bilbrey , Mario Michael Krell , Tom Murray , Ang Li , Sotiris Xantheas , Sutanay Choudhury

Due to the advent of the expressions of data other than tabular formats, the topological compositions which make samples interrelated came into prominence. Analogically, those networks can be interpreted as social connections, dataflow…

Social and Information Networks · Computer Science 2023-01-27 Hacı İsmail Aslan , Chang Choi , Hoon Ko

Blood flow reconstruction in the vasculature is important for many clinical applications. However, in clinical settings, the available data are often quite limited. For instance, Transcranial Doppler ultrasound (TCD) is a noninvasive…

Image and Video Processing · Electrical Eng. & Systems 2024-03-18 Shaghayegh Z. Ashtiani , Mohammad Sarabian , Kaveh Laksari , Hessam Babaee

Kernel methods have great promise for learning rich statistical representations of large modern datasets. However, compared to neural networks, kernel methods have been perceived as lacking in scalability and flexibility. We introduce a…

Machine Learning · Computer Science 2014-12-22 Zichao Yang , Alexander J. Smola , Le Song , Andrew Gordon Wilson

A novel approach is put forth that utilizes data similarity, quantified on a graph, to improve upon the reconstruction performance of principal component analysis. The tasks of data dimensionality reduction and reconstruction are formulated…

Machine Learning · Statistics 2018-09-26 Ioannis D. Schizas

Exploiting the variational interpretation of kernel interpolation we exhibit a direct connection between interpolation and regression, where interpolation appears as a limiting case of regression. By applying this framework to point clouds…

Numerical Analysis · Mathematics 2026-02-09 Patrick Guidotti

Graph classification is a pivotal challenge in machine learning, especially within the realm of graph-based data, given its importance in numerous real-world applications such as social network analysis, recommendation systems, and…

Machine Learning · Computer Science 2024-07-03 Bowen Zhang , Zhichao Huang , Genan Dai , Guangning Xu , Xiaomao Fan , Hu Huang

Graph embeddings have emerged as a powerful tool for representing complex network structures in a low-dimensional space, enabling the use of efficient methods that employ the metric structure in the embedding space as a proxy for the…

Social and Information Networks · Computer Science 2024-04-18 Radosław Nowak , Adam Małkowski , Daniel Cieślak , Piotr Sokół , Paweł Wawrzyński

One of the most crucial challenges in graph signal processing is the sampling of bandlimited graph signals, i.e., signals that are sparse in a well-defined graph Fourier domain. So far, the prior art is mostly focused on (sub)sampling…

Signal Processing · Electrical Eng. & Systems 2018-10-22 Elvin Isufi , Paolo Banelli , Paolo Di Lorenzo , Geert Leus

This paper presents an estimation method for time-varying graph signals among multiple sub-networks. In many sensor networks, signals observed are associated with nodes (i.e., sensors), and edges of the network represent the inter-node…

Signal Processing · Electrical Eng. & Systems 2024-09-18 Tsutahiro Fukuhara , Junya Hara , Hiroshi Higashi , Yuichi Tanaka