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We consider the phylogenetic tree reconstruction problem with insertions and deletions (indels). Phylogenetic algorithms proceed under a model where sequences evolve down the model tree, and given sequences at the leaves, the problem is to…

Data Structures and Algorithms · Computer Science 2019-02-22 Arun Ganesh , Qiuyi Zhang

In this work, we study the robust phase retrieval problem where the task is to recover an unknown signal $\theta^* \in \mathbb{R}^d$ in the presence of potentially arbitrarily corrupted magnitude-only linear measurements. We propose an…

Machine Learning · Computer Science 2024-09-10 Adarsh Barik , Anand Krishna , Vincent Y. F. Tan

Given access to the vertex set $V$ of a connected graph $G=(V,E)$ and an oracle that given two vertices $u,v\in V$, returns the shortest path distance between $u$ and $v$, how many queries are needed to reconstruct $E$? Firstly, we show…

Data Structures and Algorithms · Computer Science 2024-10-17 Paul Bastide , Carla Groenland

In the past few years, a successful line of research has lead to lower bounds for several fundamental local graph problems in the distributed setting. These results were obtained via a technique called round elimination. On a high level,…

Distributed, Parallel, and Cluster Computing · Computer Science 2024-10-29 Alkida Balliu , Sebastian Brandt , Fabian Kuhn , Dennis Olivetti , Joonatan Saarhelo

Quartet Reconstruction, the task of recovering a phylogenetic tree from smaller trees on four species called \textit{quartets}, is a well-studied problem in theoretical computer science with far-reaching connections to statistics, graph…

Data Structures and Algorithms · Computer Science 2026-04-21 Dionysis Arvanitakis , Vaggos Chatziafratis , Yiyuan Luo , Konstantin Makarychev

In this paper, we derive an expression for the expected number of runs in a trace of a binary sequence $x \in \{0,1\}^n$ obtained by passing $x$ through a deletion channel that independently deletes each bit with probability $q$. We use…

Information Theory · Computer Science 2025-11-06 Shiv Pratap Singh Rathore , Navin Kashyap

Randomized approximation algorithms for many #P-complete problems (such as the partition function of a Gibbs distribution, the volume of a convex body, the permanent of a $\{0,1\}$-matrix, and many others) reduce to creating random…

Computation · Statistics 2017-06-30 Mark Huber

Makespan scheduling on identical machines is one of the most basic and fundamental packing problems studied in the discrete optimization literature. It asks for an assignment of $n$ jobs to a set of $m$ identical machines that minimizes the…

Data Structures and Algorithms · Computer Science 2016-04-26 Klaus Jansen , Kim-Manuel Klein , José Verschae

We explore the relation between the techniques of statistical mechanics and information theory for assessing the performance of channel coding. We base our study on a framework developed by Gallager in {\em IEEE Trans. Inform. Theory} {\bf…

Information Theory · Computer Science 2009-11-13 Yoshiyuki Kabashima

Since the introduction of retroactive data structures at SODA 2004, a major unsolved problem has been to bound the gap between the best partially retroactive data structure (where changes can be made to the past, but only the present can be…

Data Structures and Algorithms · Computer Science 2018-04-26 Lijie Chen , Erik D. Demaine , Yuzhou Gu , Virginia Vassilevska Williams , Yinzhan Xu , Yuancheng Yu

Counting the number of triangles in a graph has many important applications in network analysis. Several frequently computed metrics like the clustering coefficient and the transitivity ratio need to count the number of triangles in the…

Data Structures and Algorithms · Computer Science 2013-04-24 Mostafa Haghir Chehreghani

We study the problem of list-decodable mean estimation, where an adversary can corrupt a majority of the dataset. Specifically, we are given a set $T$ of $n$ points in $\mathbb{R}^d$ and a parameter $0< \alpha <\frac 1 2$ such that an…

Data Structures and Algorithms · Computer Science 2021-11-15 Ilias Diakonikolas , Daniel M. Kane , Daniel Kongsgaard , Jerry Li , Kevin Tian

We study the problem of scheduling $n$ independent moldable tasks on $m$ processors that arises in large-scale parallel computations. When tasks are monotonic, the best known result is a $(\frac{3}{2}+\epsilon)$-approximation algorithm for…

Data Structures and Algorithms · Computer Science 2023-03-30 Xiaohu Wu , Patrick Loiseau

We consider the problem of learning a discrete distribution in the presence of an $\epsilon$ fraction of malicious data sources. Specifically, we consider the setting where there is some underlying distribution, $p$, and each data source…

Machine Learning · Computer Science 2017-11-23 Mingda Qiao , Gregory Valiant

We introduce and initiate the study of a new model of reductions called the random noise model. In this model, the truth table $T_f$ of the function $f$ is corrupted on a randomly chosen $\delta$-fraction of instances. A randomized…

Computational Complexity · Computer Science 2025-09-09 Tejas Nareddy , Abhishek Mishra

We present improved distributed algorithms for triangle detection and its variants in the CONGEST model. We show that Triangle Detection, Counting, and Enumeration can be solved in $\tilde{O}(n^{1/2})$ rounds. In contrast, the previous…

Data Structures and Algorithms · Computer Science 2018-07-19 Yi-Jun Chang , Seth Pettie , Hengjie Zhang

Tree trace reconstruction aims to learn the binary node labels of a tree, given independent samples of the tree passed through an appropriately defined deletion channel. In recent work, Davies, R\'acz, and Rashtchian used combinatorial…

Data Structures and Algorithms · Computer Science 2021-02-03 Tatiana Brailovskaya , Miklós Z. Rácz

Data reconstruction attacks on trained neural networks aim to recover the data on which the network has been trained and pose a significant threat to privacy, especially if the training dataset contains sensitive information. Here, we…

Machine Learning · Computer Science 2026-05-08 Edward Tansley , Roy Makhlouf , Estelle Massart , Coralia Cartis

The construction of confidence intervals for the mean of a bounded random variable is a classical problem in statistics with numerous applications in machine learning and virtually all scientific fields. In particular, obtaining the…

Machine Learning · Computer Science 2025-11-12 Václav Voráček , Francesco Orabona

In this paper we provide a parallel algorithm that given any $n$-node $m$-edge directed graph and source vertex $s$ computes all vertices reachable from $s$ with $\tilde{O}(m)$ work and $n^{1/2 + o(1)}$ depth with high probability in $n$ .…

Data Structures and Algorithms · Computer Science 2019-12-09 Arun Jambulapati , Yang P. Liu , Aaron Sidford