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In the standard trace reconstruction problem, the goal is to \emph{exactly} reconstruct an unknown source string $\mathsf{x} \in \{0,1\}^n$ from independent "traces", which are copies of $\mathsf{x}$ that have been corrupted by a…

Data Structures and Algorithms · Computer Science 2021-08-26 Xi Chen , Anindya De , Chin Ho Lee , Rocco A. Servedio , Sandip Sinha

The deletion channel takes as input a bit string $\mathbf{x} \in \{0,1\}^n$, and deletes each bit independently with probability $q$, yielding a shorter string. The trace reconstruction problem is to recover an unknown string $\mathbf{x}$…

Data Structures and Algorithms · Computer Science 2017-08-03 Yuval Peres , Alex Zhai

The well-known trace reconstruction problem is the problem of inferring an unknown source string $x \in \{0,1\}^n$ from independent "traces", i.e. copies of $x$ that have been corrupted by a $\delta$-deletion channel which independently…

Data Structures and Algorithms · Computer Science 2022-11-08 Xi Chen , Anindya De , Chin Ho Lee , Rocco A. Servedio , Sandip Sinha

In the trace reconstruction problem our goal is to learn an unknown string $x\in \{0,1\}^n$ given independent traces of $x$. A trace is obtained by independently deleting each bit of $x$ with some probability $\delta$ and concatenating the…

Data Structures and Algorithms · Computer Science 2024-12-02 Anders Aamand , Allen Liu , Shyam Narayanan

Trace reconstruction considers the task of recovering an unknown string $x \in \{0,1\}^n$ given a number of independent "traces", i.e., subsequences of $x$ obtained by randomly and independently deleting every symbol of $x$ with some…

Probability · Mathematics 2022-03-16 Elena Grigorescu , Madhu Sudan , Minshen Zhu

In the trace reconstruction problem, an unknown bit string $x \in \{0,1\}^n$ is observed through the deletion channel, which deletes each bit of $x$ with some constant probability $q$, yielding a contracted string $\widetilde{x}$. How many…

Probability · Mathematics 2016-12-13 Fedor Nazarov , Yuval Peres

The insertion-deletion channel takes as input a bit string ${\bf x}\in\{0,1\}^{n}$, and outputs a string where bits have been deleted and inserted independently at random. The trace reconstruction problem is to recover $\bf x$ from many…

Probability · Mathematics 2020-04-28 Nina Holden , Robin Pemantle , Yuval Peres , Alex Zhai

We consider an \emph{approximate} version of the trace reconstruction problem, where the goal is to recover an unknown string $s\in\{0,1\}^n$ from $m$ traces (each trace is generated independently by passing $s$ through a probabilistic…

Data Structures and Algorithms · Computer Science 2021-07-21 Diptarka Chakraborty , Debarati Das , Robert Krauthgamer

In the \emph{trace reconstruction problem}, an unknown source string $x \in \{0,1\}^n$ is transmitted through a probabilistic \emph{deletion channel} which independently deletes each bit with some fixed probability $\delta$ and concatenates…

Data Structures and Algorithms · Computer Science 2020-12-09 Xi Chen , Anindya De , Chin Ho Lee , Rocco A. Servedio , Sandip Sinha

Mean-based reconstruction is a fundamental, natural approach to worst-case trace reconstruction over channels with synchronization errors. It is known that $\exp(O(n^{1/3}))$ traces are necessary and sufficient for mean-based worst-case…

Information Theory · Computer Science 2021-10-14 Mahdi Cheraghchi , Joseph Downs , João Ribeiro , Alexandra Veliche

In the beautifully simple-to-state problem of trace reconstruction, the goal is to reconstruct an unknown binary string $x$ given random "traces" of $x$ where each trace is generated by deleting each coordinate of $x$ independently with…

Data Structures and Algorithms · Computer Science 2021-03-16 Akshay Krishnamurthy , Arya Mazumdar , Andrew McGregor , Soumyabrata Pal

The goal of the trace reconstruction problem is to recover a string $x\in\{0,1\}^n$ given many independent {\em traces} of $x$, where a trace is a subsequence obtained from deleting bits of $x$ independently with some given probability…

Information Theory · Computer Science 2024-01-30 Kuan Cheng , Elena Grigorescu , Xin Li , Madhu Sudan , Minshen Zhu

The ''trace reconstruction'' problem asks, given an unknown binary string $x$ and a channel that repeatedly returns ''traces'' of $x$ with each bit randomly deleted with some probability $p$, how many traces are needed to recover $x$? There…

Data Structures and Algorithms · Computer Science 2025-12-03 Arnav Burudgunte , Paul Valiant , Hongao Wang

In the usual trace reconstruction problem, the goal is to exactly reconstruct an unknown string of length $n$ after it passes through a deletion channel many times independently, producing a set of traces (i.e., random subsequences of the…

Data Structures and Algorithms · Computer Science 2020-12-17 Sami Davies , Miklos Z. Racz , Cyrus Rashtchian , Benjamin G. Schiffer

The population recovery problem asks one to recover an unknown distribution over $n$-bit strings given access to independent noisy samples of strings drawn from the distribution. Recently, Ban et al. [BCF+19] studied the problem where the…

Data Structures and Algorithms · Computer Science 2020-11-05 Shyam Narayanan

The goal of trace reconstruction is to reconstruct an unknown $n$-bit string $x$ given only independent random traces of $x$, where a random trace of $x$ is obtained by passing $x$ through a deletion channel. A Statistical Query (SQ)…

Data Structures and Algorithms · Computer Science 2024-07-17 Xi Chen , Anindya De , Chin Ho Lee , Rocco A. Servedio

The {\em insertion-deletion channel} takes as input a binary string $x \in\{0, 1\}^n$, and outputs a string $\widetilde{x}$ where some of the bits have been deleted and others inserted independently at random. In the {\em trace…

Information Theory · Computer Science 2022-08-15 Ittai Rubinstein

Trace reconstruction is the problem of learning an unknown string $x$ from independent traces of $x$, where traces are generated by independently deleting each bit of $x$ with some deletion probability $q$. In this paper, we initiate the…

Data Structures and Algorithms · Computer Science 2020-12-15 Shyam Narayanan , Michael Ren

Several recent works have considered the \emph{trace reconstruction problem}, in which an unknown source string $x\in\{0,1\}^n$ is transmitted through a probabilistic channel which may randomly delete coordinates or insert random bits,…

Data Structures and Algorithms · Computer Science 2019-07-16 Frank Ban , Xi Chen , Rocco A. Servedio , Sandip Sinha

We introduce the following natural generalization of trace reconstruction, parameterized by a deletion probability $\delta \in (0,1)$ and length $n$: There is a length $n$ string of probabilities, $S=p_1,\ldots,p_n,$ and each "trace" is…

Data Structures and Algorithms · Computer Science 2024-12-03 Joey Rivkin , Gregory Valiant , Paul Valiant
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