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A discrete electrostatic/diffusion model has been developed to describe the selective permeation of ion channels, based on ionic Coulomb blockade (ICB) and quantised dehydration (QD). It has been applied to describe selectivity phenomena…

The conduction and selectivity of calcium/sodium ion channels are described in terms of ionic Coulomb blockade, a phenomenon based on charge discreteness and an electrostatic model of an ion channel. This novel approach provides a unified…

Biological Physics · Physics 2014-05-07 I. Kh. Kaufman , P. V. E. McClintock , R. S. Eisenberg

We use Brownian dynamics simulations to study the permeation properties of a generic electrostatic model of a biological ion channel as a function of the fixed charge $Q_f$ at its selectivity filter. We reconcile the recently-discovered…

Biological Physics · Physics 2013-12-05 I. Kaufman , D. G. Luchinsky , R. Tindjong , P. V. E. McClintock , R. S. Eisenberg

Ionic Coulomb blockade in nanopores is a phenomenon that shares some similarities but also differences with its electronic counterpart. Here, we investigate extensively this phenomenon using all-atom molecular dynamics of ionic transport…

Mesoscale and Nanoscale Physics · Physics 2017-12-27 Hiroya Tanaka , Hideo Iizuka , Yuriy V. Pershin , Massimiliano Di Ventra

Ionic Coulomb blockade (ICB) is an electrostatic phenomenon recently discovered in low-capacitance ion channels/nanopores. Depending on the fixed charge that is present, ICB strongly and selectively influences the ease with which a given…

Biological Physics · Physics 2017-07-31 I. Kh. Kaufman , W. A. T. Gibby , D. G. Luchinsky , P. V. E. McClintock

The anomalous mole fraction effect (AMFE) is widely regarded as a hallmark of calcium versus monovalent ion selectivity in negatively charged pores. While AMFE is well understood in highly cation-selective narrow ion channels, its…

Mesoscale and Nanoscale Physics · Physics 2026-02-24 Eszter Lakics , Mónika Valiskó , Dirk Gillespie , Dezső Boda

Recent advances in nanofluidics have allowed exploration of ion transport down to molecular scale confinement, yet artificial porins are still far from reaching the advanced functionalities of biological ion machinery. Achieving single ion…

Soft Condensed Matter · Physics 2020-05-12 Nikita Kavokine , Sophie Marbach , Alessandro Siria , Lydéric Bocquet

Ionic Coulomb blockade is one of the mesoscopic effects in ion transport revealing the quantized nature of ionic charges, which is of crucial importance to our understanding of the sub-continuum transport in nanofluidics and the mechanism…

Mesoscale and Nanoscale Physics · Physics 2020-12-29 Fanfan Chen , Zonglin Gu , Chunxiao Zhao , Yuang Chen , Xiaowei Jiang , Zhi He , Yuxian Lu , Ruhong Zhou , Jiandong Feng

Ion channels are membrane proteins responsible for an enormous range of biological functions. Ion selectivity and permeation are based on simple laws of physics and chemistry. Ion channels are therefore ideal candidates for physical…

Biological Physics · Physics 2012-06-14 Janhavi Giri

Understanding the dynamics of ions in nanopores is essential for applications ranging from single-molecule detection to DNA sequencing. We show both analytically and by means of molecular dynamics simulations that under specific conditions…

Soft Condensed Matter · Physics 2011-06-08 Matt Krems , Massimiliano Di Ventra

Here we show, combining a simulation and theoretical study, that electrostatic correlations typical of multivalent ions can reverse the selectivity of a biological nanochannel. Our results provide a physical mechanism for a new,…

Materials Science · Physics 2011-03-03 Marcel Aguilella-Arzo , Carles Calero , Jordi Faraudo

When channels were scaled down to the size of hydrated ions, ionic Coulomb blockade was discovered. However, the experimental CB phenomenon was rarely reported since Feng et.al., discovered in MoS2 nanopore. By using latent-track membranes…

Soft Condensed Matter · Physics 2022-11-18 Yanbo Xie , Deli Shi , Wenhui Wang , Ziheng Wang

Ion transport through charged nanopores is commonly interpreted in terms of electrical double layer structure, leading to the expectation of cation-selective conduction in negatively charged pores. This picture can break down for…

Statistical Mechanics · Physics 2026-04-29 Salman Shabbir , Dezső Boda , Zoltán Ható

We performed all-atom molecular dynamics simulations studying the partition of ions and the ionic current through the bacterial porin OmpF and two selected mutants. The study is motivated by new interesting experimental findings concerning…

Materials Science · Physics 2015-05-19 Jordi Faraudo , Carles Calero , Marcel Aguilella-Arzo

The effect of fluctuations on the conductivity of ion channels is investigated. It is shown that modulation of the potential barrier at the selectivity site due to electrostatic amplification of charge fluctuations at the channel mouth…

Biological Physics · Physics 2009-11-13 D. G. Luchinsky , R. Tindjong , I. Kaufman , P. V. E. McClintock , R. S. Eisenberg

The transport of fluids at the nanoscale is fundamental to manifold biological and industrial processes, ranging from neurotransmission to ultrafiltration. Yet, it is only recently that well-controlled channels with cross-sections as small…

Mesoscale and Nanoscale Physics · Physics 2022-10-05 Nikita Kavokine , Paul Robin , Lydéric Bocquet

In this work, we examine effects of large permanent charges on ionic flow through ion channels based on a quasi-one dimensional Poisson-Nernst-Planck model. It turns out large positive permanent charges inhibit the flux of cation as…

Quantitative Methods · Quantitative Biology 2017-12-20 Liwei Zhang , Bob Eisenberg , Weishi Liu

The phase offset between surface charge modulation and geometric undulations in a corrugated nanochannel provides a tunable mechanism for rectified, diode-like ion transport under purely pressure-driven conditions: reversing the applied…

Fluid Dynamics · Physics 2026-05-15 Thomas Petersen , Pouya Golchin , Jinwoo Im , Felipe P. J. de Barros

We point out that single electron charging effects such as Coulomb Blockade (CB) and high-bias staircases play a crucial role in transport through single ultrashort molecules. A treatment of Coulomb Blockade through a prototypical molecule,…

Mesoscale and Nanoscale Physics · Physics 2009-11-11 Bhaskaran Muralidharan , Avik W Ghosh , Swapan K Pati , Supriyo Datta

Ion transport measurements are widely used as an indirect probe for various properties of confined electrolytes. It is generally assumed that the ion concentration in a nanoscale channel is equal to the ion concentration in the macroscopic…

Soft Condensed Matter · Physics 2023-04-05 Paul Robin , Adrien Delahais , Lydéric Bocquet , Nikita Kavokine
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