Related papers: An EMOF-Compliant Abstract Syntax for Bigraphs

Graph structure expression plays a vital role in distinguishing various graphs. In this work, we propose a Structure-Sensitive Graph Dictionary Embedding (SS-GDE) framework to transform input graphs into the embedding space of a graph…

The ability to reason with and integrate different sensory inputs is the foundation underpinning human intelligence and it is the reason for the growing interest in modelling multi-modal information within Knowledge Graphs. Multi-Modal…

Characterizing materials with electron micrographs is a crucial task in fields such as semiconductors and quantum materials. The complex hierarchical structure of micrographs often poses challenges for traditional classification methods. In…

The increased interest in deep learning applications, and their hard-to-detect biases result in the need to validate and explain complex models. However, current explanation methods are limited as far as both the explanation of the…

Large Language Models (LLMs) are increasingly applied to tasks involving structured inputs such as graphs. Abstract Meaning Representations (AMRs), which encode rich semantics as directed graphs, offer a rigorous testbed for evaluating LLMs…

We introduce the AutoGRAMS framework for programming multi-step interactions with language models. AutoGRAMS represents AI agents as a graph, where each node can execute either a language modeling instruction or traditional code. Likewise,…

Foundation models have emerged as critical components in a variety of artificial intelligence applications, and showcase significant success in natural language processing and several other domains. Meanwhile, the field of graph machine…

Explorative flow visualization allows domain experts to analyze complex flow structures by interactively investigating flow patterns. However, traditional visual interfaces often rely on specialized graphical representations and…

With growing demand for interpretability in deep learning, especially in high stakes domains, Concept Bottleneck Models (CBMs) address this by inserting human understandable concepts into the prediction pipeline, but they are generally…

An understandable concrete syntax and a comprehensible abstract syntax are two central aspects of defining a modeling language. Both representations of a language significantly overlap in their structure and also information, but may also…

Mechanisms are a fundamental concept in many areas of science. Nonetheless, there has been little effort to develop structures to represent mechanisms. We explore the issues in developing a basic semantic modeling framework for describing…

Graphs are ubiquitous data structures for representing interactions between entities. With an emphasis on the use of graphs to represent chemical molecules, we explore the task of learning to generate graphs that conform to a distribution…

Geometric, topological and graph theory modeling and analysis of biomolecules are of essential importance in the conceptualization of molecular structure, function, dynamics, and transport. On the one hand, geometric modeling provides…

Monographs are graph-like structures with directed edges of unlimited length that are freely adjacent to each other. The standard nodes are represented as edges of length zero. They can be drawn in a way consistent with standard graphs and…

Text-attributed graphs (TAGs) present unique challenges in representation learning by requiring models to capture both the semantic richness of node-associated texts and the structural dependencies of the graph. While graph neural networks…

The Metadata Object Description Schema (MODS) was developed to describe bibliographic concepts and metadata and is maintained by the Library of Congress. Its authoritative version is given as an XML schema based on an XML mindset which…

Multimodal alignment is commonly learned from isolated image-text pairs via CLIP-style dual encoders, leaving the relational context among entities largely unused. Multimodal attributed graphs (MAGs), where nodes carry multimodal attributes…

Accurate and efficient physical simulations are essential in science and engineering, yet traditional numerical solvers face significant challenges in computational cost when handling simulations across dynamic scenarios involving complex…

Many textual software languages share common concepts such as defining and referencing elements, hierarchical structures constraining the visibility of names, and allowing for identical names for different element kinds. Symbol tables are…

Contextual adaptation in token embeddings plays a central role in determining how well language models maintain coherence and retain semantic relationships over extended text sequences. Static embeddings often impose constraints on lexical…