Related papers: Minimizing the Continuous Diameter when Augmenting…
In the $L_0$ Fitting Tree Metrics problem, we are given all pairwise distances among the elements of a set $V$ and our output is a tree metric on $V$. The goal is to minimize the number of pairwise distance disagreements between the input…
Understanding the evolution of a set of genes or species is a fundamental problem in evolutionary biology. The problem we study here takes as input a set of trees describing {possibly discordant} evolutionary scenarios for a given set of…
The Euclidean Steiner tree problem asks to find a min-cost metric graph that connects a given set of \emph{terminal} points $X$ in $\mathbb{R}^d$, possibly using points not in $X$ which are called Steiner points. Even though near-linear…
We consider the $s$-$t$-path TSP: given a finite metric space with two elements $s$ and $t$, we look for a path from $s$ to $t$ that contains all the elements and has minimum total distance. We improve the approximation ratio for this…
Supertree methods are tree reconstruction techniques that combine several smaller gene trees (possibly on different sets of species) to build a larger species tree. The question of interest is whether the reconstructed supertree converges…
Let G = (V, E) be a directed and weighted graph with vertex set V of size n and edge set E of size m, such that each edge (u, v) \in E has a real-valued weight w(u, c). An arborescence in G is a subgraph T = (V, E') such that for a vertex u…
Computing a Euclidean minimum spanning tree of a set of points is a seminal problem in computational geometry and geometric graph theory. We combine it with another classical problem in graph drawing, namely computing a monotone geometric…
Let $G$ be a weighted graph embedded in a metric space $(M, d_M )$. The vertices of $G$ correspond to the points in $M$ , with the weight of each edge $uv$ being the distance $d_M (u, v)$ between their respective points in $M$ . The…
Many robotics applications benefit from being able to compute multiple locally optimal paths in a given configuration space. Examples include path planning for of tethered robots with cable-length constraints, systems involving cables,…
We consider an infinite graph with the vertex set $\mathbb{Z}^2$ and edges connecting the vertices iff the Euclidean distance between the respective points is an integer, and the points do not lie on the same horizontal or vertical.…
We consider edge insertion and deletion operations that increase the connectivity of a given planar straight-line graph (PSLG), while minimizing the total edge length of the output. We show that every connected PSLG $G=(V,E)$ in general…
Let $G=(V,E)$ be a connected graph and $d_{G}(u,v)$ be the shortest distance between the vertices $u$ and $v$ in $G$. A set $S=\{s_{1},s_{2},\cdots,s_{n}\}\subset V(G)$ is said to be a {\em resolving set} if for all distinct vertices $u,v$…
There are several interrelated notions of discrete curvature on graphs. Many approaches utilize the optimal transportation metric on its probability simplex or the distance matrix of the graph. In this survey article, we compute formulas…
An added edge to a graph is called an inset edge. Predicting k inset edges which minimize the average distance of a graph is known to be NP-Hard. When k = 1 the complexity of the problem is polynomial. In this paper, we further find the…
The largest common embeddable subtree problem asks for the largest possible tree embeddable into two input trees and generalizes the classical maximum common subtree problem. Several variants of the problem in labeled and unlabeled rooted…
Assume that we embed the path $P_n$ as a subgraph of a $2$-dimensional grid, namely, $P_k \times P_l$. Given such an embedding, we consider the ordered set of subpaths $L_1, L_2, \ldots , L_m$ which are maximal straight segments in the…
In this paper, we consider a tree inference problem motivated by the critical problem in single-cell genomics of reconstructing dynamic cellular processes from sequencing data. In particular, given a population of cells sampled from such a…
The graph invariant EPT-sum has cropped up in several unrelated fields in later years: As an objective function for hierarchical clustering, as a more fine-grained version of the classical edge ranking problem, and, specifically when the…
Finding a minimum spanning tree (MST) for $n$ points in an arbitrary metric space is a fundamental primitive for hierarchical clustering and many other ML tasks, but this takes $\Omega(n^2)$ time to even approximate. We introduce a…
The Steiner tree problem in graphs has applications in network design or circuit layout. Given a set $S$ of vertices, $|S| \geq 2,$ a tree connecting all vertices of $S$ is called an $S$-Steiner tree (tree connecting $S$). The reliability…