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Related papers: Motif Clustering and Overlapping Clustering for So…

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Clustering algorithms are an essential part of the unsupervised data science ecosystem, and extrinsic evaluation of clustering algorithms requires a method for comparing the detected clustering to a ground truth clustering. In a general…

Machine Learning · Computer Science 2026-03-23 Ryan DeWolfe , Paweł Prałat , François Théberge

We address the problem of un-supervised soft-clustering called micro-clustering. The aim of the problem is to enumerate all groups composed of records strongly related to each other, while standard clustering methods separate records at…

Data Structures and Algorithms · Computer Science 2016-06-07 Takeaki Uno , Hiroki Maegawa , Takanobu Nakahara , Yukinobu Hamuro , Ryo Yoshinaka , Makoto Tatsuta

Topological network motifs represent functional relationships within and between regulatory and protein-protein interaction networks. Enriched motifs often aggregate into self-contained units forming functional modules. Theoretical models…

Molecular Networks · Quantitative Biology 2011-09-12 Tom Michoel , Anagha Joshi , Bruno Nachtergaele , Yves Van de Peer

Higher-order connectivity patterns such as small induced sub-graphs called graphlets (network motifs) are vital to understand the important components (modules/functional units) governing the configuration and behavior of complex networks.…

Social and Information Networks · Computer Science 2020-09-15 Aldo G. Carranza , Ryan A. Rossi , Anup Rao , Eunyee Koh

Correlation Clustering is a powerful graph partitioning model that aims to cluster items based on the notion of similarity between items. An instance of the Correlation Clustering problem consists of a graph $G$ (not necessarily complete)…

Data Structures and Algorithms · Computer Science 2019-06-25 Sanchit Kalhan , Konstantin Makarychev , Timothy Zhou

Community detection is a critical challenge in analysing real graphs, including social, transportation, citation, cybersecurity, and many other networks. This article proposes three new, general, hierarchical frameworks to deal with this…

Social and Information Networks · Computer Science 2023-05-25 Łukasz Brzozowski , Grzegorz Siudem , Marek Gagolewski

We propose a new model to detect the overlapping communities of a network that is based on cooperative games and mathematical programming. More specifically, communities are defined as stable coalitions of a weighted graph community game…

Optimization and Control · Mathematics 2023-01-26 Stefano Benati , Justo Puerto , Antonio M. Rodríguez-Chía , Francisco Temprano

The goal of co-clustering is to simultaneously identify a clustering of rows as well as columns of a two dimensional data matrix. A number of co-clustering techniques have been proposed including information-theoretic co-clustering and the…

Machine Learning · Computer Science 2020-04-27 Joyce Jiyoung Whang , Inderjit S. Dhillon

Consensus clustering, a fundamental task in machine learning and data analysis, aims to aggregate multiple input clusterings of a dataset, potentially based on different non-sensitive attributes, into a single clustering that best…

Machine Learning · Computer Science 2025-06-18 Diptarka Chakraborty , Kushagra Chatterjee , Debarati Das , Tien Long Nguyen , Romina Nobahari

Graph clustering, which aims to divide nodes in the graph into several distinct clusters, is a fundamental yet challenging task. Benefiting from the powerful representation capability of deep learning, deep graph clustering methods have…

Machine Learning · Computer Science 2023-09-13 Yue Liu , Jun Xia , Sihang Zhou , Xihong Yang , Ke Liang , Chenchen Fan , Yan Zhuang , Stan Z. Li , Xinwang Liu , Kunlun He

Motifs are the fundamental components of complex systems. The topological structure of networks representing complex systems and the frequency and distribution of motifs in these networks are intertwined. The complexities associated with…

Social and Information Networks · Computer Science 2020-05-21 Ali Jazayeri , Christopher C. Yang

Clustering is the propensity of nodes that share a common neighbour to be connected. It is ubiquitous in many networks but poses many modelling challenges. Clustering typically manifests itself by a higher than expected frequency of…

Dynamical Systems · Mathematics 2016-01-07 Martin Ritchie , Luc Berthouze , Istvan Z. Kiss

Graph clustering aims at discovering a natural grouping of the nodes such that similar nodes are assigned to a common cluster. Many different algorithms have been proposed in the literature: for simple graphs, for graphs with attributes…

Machine Learning · Computer Science 2023-11-06 Ylli Sadikaj , Yllka Velaj , Sahar Behzadi , Claudia Plant

Graph clustering is a fundamental computational problem with a number of applications in algorithm design, machine learning, data mining, and analysis of social networks. Over the past decades, researchers have proposed a number of…

Data Structures and Algorithms · Computer Science 2017-11-06 He Sun , Luca Zanetti

For data represented by networks, the community structure of the underlying graph is of great interest. A classical clustering problem is to uncover the overall ``best'' partition of nodes in communities. Here, a more elaborate description…

Physics and Society · Physics 2013-11-11 Nicolas Tremblay , Pierre Borgnat

The community structure of complex networks reveals both their organization and hidden relationships among their constituents. Most community detection methods currently available are not deterministic, and their results typically depend on…

Physics and Society · Physics 2012-03-29 Andrea Lancichinetti , Santo Fortunato

It has been hypothesized that some form of "modular" structure in artificial neural networks should be useful for learning, compositionality, and generalization. However, defining and quantifying modularity remains an open problem. We cast…

Machine Learning · Computer Science 2022-06-23 Richard D. Lange , David S. Rolnick , Konrad P. Kording

Algorithms for detecting clusters (including overlapping clusters) in graphs have received significant attention in the research community. A closely related important aspect of the problem -- quantification of statistical significance of…

Social and Information Networks · Computer Science 2016-05-23 Abram Magner , Shahin Mohammadi , Ananth Grama

We introduce a novel criterion in clustering that seeks clusters with limited range of values associated with each cluster's elements. In clustering or classification the objective is to partition a set of objects into subsets, called…

Data Structures and Algorithms · Computer Science 2018-05-15 Dorit S. Hochbaum

Many data analysis problems rely on dynamic networks, such as social or communication network analyses. Providing a scalable overview of long sequences of such dynamic networks remains challenging due to the underlying large-scale data…

Social and Information Networks · Computer Science 2022-08-26 Eren Cakmak , Johannes Fuchs , Dominik Jäckle , Tobias Schreck , Ulrik Brandes , Daniel Keim