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As an important application of spatial databases in pathology imaging analysis, cross-comparing the spatial boundaries of a huge amount of segmented micro-anatomic objects demands extremely data- and compute-intensive operations, requiring…

Databases · Computer Science 2012-08-02 Kaibo Wang , Yin Huai , Rubao Lee , Fusheng Wang , Xiaodong Zhang , Joel H. Saltz

This paper describes a new approach to the optimization of information extraction in multi-wavelength image cubes of cosmological fields. The objective is to create a framework for the automatic identification and tagging of sources…

Instrumentation and Methods for Astrophysics · Physics 2015-06-04 Maria Jose Marquez

Coming high-cadence wide-field optical telescopes will image hundreds of thousands of sources per minute. Besides inspecting the near real-time data streams for transient and variability events, the accumulated data archive is a wealthy…

Instrumentation and Methods for Astrophysics · Physics 2018-03-20 Bart Scheers , Steven Bloemen , Hannes Mühleisen , Pim Schellart , Arjen van Elteren , Martin Kersten , Paul J. Groot

Large catalogues are ubiquitous throughout astronomy, but most scientific analyses are carried out on smaller samples selected from these catalogues by chosen cuts on catalogued quantities. The selection function of that scientific sample -…

Instrumentation and Methods for Astrophysics · Physics 2022-01-05 Douglas Boubert , Andrew Everall

Very High Resolution satellite and aerial imagery are used to monitor and conduct large scale surveys of ecological systems. Convolutional Neural Networks have successfully been employed to analyze such imagery to detect large animals and…

Distributed, Parallel, and Cluster Computing · Computer Science 2020-10-29 Aymen Al-Saadi , Ioannis Paraskevakos , Bento Collares Gonçalves , Heather J. Lynch , Shantenu Jha , Matteo Turilli

Matching astronomical catalogs in crowded regions of the sky is challenging both statistically and computationally due to the many possible alternative associations. Budav\'ari and Basu (2016) modeled the two-catalog situation as an…

Instrumentation and Methods for Astrophysics · Physics 2018-11-14 Xiaochen Shi , Tamas Budavari , Amitabh Basu

Compendium Manager is a command-line tool written in Python to automate the provisioning, launch, and evaluation of bioinformatics pipelines. Although workflow management tools such as Snakemake and Nextflow enable users to automate the…

Genomics · Quantitative Biology 2025-05-19 Richard J. Abdill , Ran Blekhman

The volume of data generated by modern astronomical telescopes is extremely large and rapidly growing. However, current high-performance data processing architectures/frameworks are not well suited for astronomers because of their…

Instrumentation and Methods for Astrophysics · Physics 2017-01-25 Shoulin Wei , Feng Wang , Hui Deng , Cuiyin Liu , Wei Dai , Bo Liang , Ying Mei , Congming Shi , Yingbo Liu , Jingping Wu

We present a visual analytics tool, based on the VisIVO suite, to exploit a combination of all new-generation surveys of the Galactic Plane to study the star formation process of the Milky Way. The tool has been developed within the…

Current and future astronomical surveys are producing catalogs with millions and billions of objects. On-line access to such big datasets for data mining and cross-correlation is usually as highly desired as unfeasible. Providing these…

Databases · Computer Science 2007-05-23 Maria A. Nieto-Santisteban , Aniruddha R. Thakar , Alexander S. Szalay , Jim Gray

PHOTOMETRYPIPELINE (PP) is an automated pipeline that produces calibrated photometry from imaging data through image registration, aperture photometry, photometric calibration, and target identification with only minimal human interaction.…

Instrumentation and Methods for Astrophysics · Physics 2017-02-06 Michael Mommert

We present a new software pipeline -- PyMorph -- for automated estimation of structural parameters of galaxies. Both parametric fits through a two dimensional bulge disk decomposition as well as structural parameter measurements like…

Instrumentation and Methods for Astrophysics · Physics 2015-05-19 Vinu Vikram , Yogesh Wadadekar , Ajit K. Kembhavi , G. V. Vijayagovindan

The Third Reference Catalogue of Bright Galaxies (RC3) is a reasonably complete listing of 23,011 nearby, large, bright galaxies. By using the final imaging data release from the Sloan Digital Sky Survey, we generate…

Instrumentation and Methods for Astrophysics · Physics 2015-12-04 Jung Lin Lee , Robert J. Brunner

High performance computing has been used in various fields of astrophysical research. But most of it is implemented on massively parallel systems (supercomputers) or graphical processing unit clusters. With the advent of multicore…

Instrumentation and Methods for Astrophysics · Physics 2013-07-30 Navtej Singh , Lisa-Marie Browne , Ray Butler

While coarse-grained reconfigurable arrays (CGRAs) have emerged as promising programmable accelerator architectures, pipelining applications running on CGRAs is required to ensure high maximum clock frequencies. Current CGRA compilers…

Hardware Architecture · Computer Science 2022-11-24 Jackson Melchert , Yuchen Mei , Kalhan Koul , Qiaoyi Liu , Mark Horowitz , Priyanka Raina

Context. Although the Gaia catalogue on its own is a very powerful tool, it is the combination of this high-accuracy archive with other archives that will truly open up amazing possibilities for astronomical research. The advanced…

Solar and Stellar Astrophysics · Physics 2019-01-28 P. M. Marrese , S. Marinoni , M. Fabrizio , G. Altavilla

We propose a systematic framework to conduct design-technology pathfinding for PPAC in advanced nodes. Our goal is to provide configurable, scalable generation of process design kit (PDK) and standard-cell library, spanning key scaling…

Hardware Architecture · Computer Science 2023-04-27 Suhyeong Choi , Jinwook Jung , Andrew B. Kahng , Minsoo Kim , Chul-Hong Park , Bodhisatta Pramanik , Dooseok Yoon

In this paper I will describe a new software package developed using the Java programming language, aimed to compute the positions of any Solar System body (among asteroids, comets, planets, and satellites) to help to perform cross-matches…

Instrumentation and Methods for Astrophysics · Physics 2025-05-20 T. Alonso-Albi

PlanetPack, initially released in 2013, is a command-line software aimed to facilitate exoplanets detection, characterization, and basic dynamical $N$-body simulations. This paper presents the third major release of PlanetPack that…

Instrumentation and Methods for Astrophysics · Physics 2018-11-05 Roman V. Baluev

The Earth Observation planning community has access to tools that can propagate orbits and compute coverage of Earth observing imagers with customizable shapes and orientation, model the expected Earth Reflectance at various bands, epochs…

Systems and Control · Electrical Eng. & Systems 2020-10-21 Sreeja Nag , Philip Dabney , Vinay Ravindra , Cody Anderson