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A continuum model of epithelial tissue mechanics was formulated using cellular-level mechanical ingredients and cell morphogenetic processes, including cellular shape changes and cellular rearrangements. This model can include finite…

Tissues and Organs · Quantitative Biology 2017-09-06 Shuji Ishihara , Philippe Marcq , Kaoru Sugimura

Dendrites with developed sidebranches are numerically studied with a coupled map lattice model. The competitive dynamics among sidebranches determines the shape of the envelope. The envelope has a parabolic shape near the tip of the…

Pattern Formation and Solitons · Physics 2009-11-10 H. Sakaguchi , M. Ohtaki

A limited mobility nonequilibrium solid-on-solid dynamical model for kinetic surface growth is introduced as a simple description for the morphological evolution of a growing interface under random vapor deposition and surface diffusion…

Statistical Mechanics · Physics 2007-05-23 S. Das Sarma , P. Punyindu

The phenomenological model for cell shape deformation and cell migration (Chen et.al. 2018; Vermolen and Gefen 2012) is extended with the incorporation of cell traction forces and the evolution of cell equilibrium shapes as a result of cell…

Cell Behavior · Quantitative Biology 2021-04-27 Qiyao Peng , Fred Vermolen , Daphne Weihs

Cell deformability is an essential determinant for tissue-scale mechanical nature, such as fluidity and rigidity, and is thus crucial for understanding tissue homeostasis and stable developmental processes. However, numerical simulations…

Tissues and Organs · Quantitative Biology 2023-03-08 Nen Saito , Shuji Ishihara

The generation mechanism of growth strains is investigated theoretically by developing an elastic analysis of a wood cell viewed as a composite tube, with layers composed of a ligno-cellulosic material of varying composition and…

Classical Physics · Physics 2016-08-16 François Sassus , Tancrède Alméras , Joseph Gril , Hiroyuki Yamamoto

In this article, we focus on a very special class of foliations with complex leaves whose diffeomorphism type is fixed. They have a unique compact leaf and the noncompact leaves all accumulate onto it. We show that the complex structure…

Complex Variables · Mathematics 2009-02-26 Laurent Meersseman , Marcel Nicolau , Alberto Verjovsky

Embryonic development involves pattern formation characterized by the emergence of spatially localized domains characterized by distinct cell fates resulting from differential gene expression. The boundaries demarcating these domains are…

Tissues and Organs · Quantitative Biology 2024-06-11 Chandrashekar Kuyyamudi , Shakti N. Menon , Sitabhra Sinha

Understanding the evolution of a set of genes or species is a fundamental problem in evolutionary biology. The problem we study here takes as input a set of trees describing {possibly discordant} evolutionary scenarios for a given set of…

Data Structures and Algorithms · Computer Science 2019-07-10 Cedric Chauve , Mark Jones , Manuel Lafond , Céline Scornavacca , Mathias Weller

We present a thorough study of the plastic response of a granular material progressively loaded. We study experimentally the evolution of the plastic field from a homogeneous one to an heterogeneous one and its fluctuations in term of…

Soft Condensed Matter · Physics 2018-08-29 David Houdoux , Thai Binh Nguyen , Axelle Amon , Jérôme Crassous , Thai Nguyen

The irreversible growth of a magnetic film with spins having two possible orientations is studied in three-dimensional confined geometries of size $L\times L\times M$, where $M\gg L$ is the growing direction. A competing situation with two…

Condensed Matter · Physics 2009-11-07 Julián Candia , Ezequiel V. Albano

A simplified model of clonal plant growth is formulated, motivated by observations of spatial structures in Posidonia oceanica meadows in the Mediterranean Sea. Two levels of approximation are considered for the scale-dependent feedback…

Pattern Formation and Solitons · Physics 2020-09-18 Daniel Ruiz-Reynes , Luis Martin , Emilio Hernandez-Garcia , Edgar Knobloch , Damia Gomila

The accurate classification of plant organs is a key step in monitoring the growing status and physiology of plants. A classification method was proposed to classify the leaves and stems of potted plants automatically based on the point…

Computer Vision and Pattern Recognition · Computer Science 2020-03-02 Zichu Liu , Qing Zhang , Pei Wang , Zhen Li , Huiru Wang

Anisotropic collective patterns occur frequently in the morphogenesis of 2D biofilms. These patterns are often attributed to growth regulation mechanisms and differentiation based on gradients of diffusing nutrients and signalling…

Biological Physics · Physics 2017-10-11 Cameron Zachreson , Xinhui Yap , Erin S. Gloag , Raz Shimoni , Cynthia B. Whitchurch , Milos Toth

From the smallest biological systems to the largest cosmological structures, spatial domains undergo expansion and contraction. Within these growing domains, diffusive transport is a common phenomenon. Mathematical models have been widely…

Populations and Evolution · Quantitative Biology 2023-06-27 Stuart T. Johnston , Matthew J. Simpson

We introduce a general theoretical framework to study the shape dynamics of actively growing and remodeling surfaces. Using this framework we develop a physical model for growing bacterial cell walls and study the interplay of cell shape…

Biological Physics · Physics 2016-04-08 Shiladitya Banerjee , Norbert F. Scherer , Aaron R. Dinner

The material structure of bodies undergoing growth is considered. In the geometric framework of a general differential manifold modeling the physical space and a fiber bundle modeling spacetime, body points may be defined for any extensive…

Mathematical Physics · Physics 2023-11-14 Vladimir Goldshtein , Reuven Segev

A model for morphoelastic growth, that is, growth influenced by elastic stress, driven by the absorption of nutrients is considered. The model features a multiplicative decomposition of the deformation gradient into an elastic contribution…

Analysis of PDEs · Mathematics 2026-05-05 Helmut Abels , Julian Blawid , Georg Dolzmann

The number of leaves a plant has is one of the key traits (phenotypes) describing its development and growth. Here, we propose an automated, deep learning based approach for counting leaves in model rosette plants. While state-of-the-art…

Computer Vision and Pattern Recognition · Computer Science 2017-09-06 Andrei Dobrescu , Mario Valerio Giuffrida , Sotirios A Tsaftaris

During development, epithelial tissues undergo extensive morphogenesis based on coordinated changes of cell shape and position over time. Continuum mechanics describes tissue mechanical state and shape changes in terms of strain and stress.…

Cell Behavior · Quantitative Biology 2012-05-14 Isabelle Bonnet , Philippe Marcq , Floris Bosveld , Luc Fetler , Yohanns Bellaiche , Francois Graner
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