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Computational methods have reshaped the landscape of modern biology. While the biomedical community is increasingly dependent on computational tools, the mechanisms ensuring open data, open software, and reproducibility are variably…

Other Quantitative Biology · Quantitative Biology 2020-07-28 Jaqueline J. Brito , Jun Li , Jason H. Moore , Casey S. Greene , Nicole A. Nogoy , Lana X. Garmire , Serghei Mangul

A source code difference (diff) indicates changes made by comparing new and old source codes, and it can be utilized in code reviews to help developers understand the changes made to the code. Although many diff generation methods have been…

Software Engineering · Computer Science 2024-09-27 Tsukasa Yagi , Shinpei Hayashi

Fuzzy systems are a way to allow machines, systems and frameworks to deal with uncertainty, which is not possible in binary systems that most computers use. These systems have already been deployed for certain use cases, and fuzzy systems…

Machine Learning · Computer Science 2025-07-10 Arthur Alexander Lim , Zhen Bin It , Jovan Bowen Heng , Tee Hui Teo

This extended abstract reports on previous work of the CamFort project in which we developed an external units-of-measure type system for Fortran code, targeted at scientists. Our approach can guide the programmer in adding specifications…

Programming Languages · Computer Science 2020-11-13 Dominic Orchard , Mistral Contrastin , Matthew Danish , Andrew Rice

Context: Software refactoring aims to improve software quality and developer productivity. Numerous empirical studies investigating the impact of refactoring activities on software quality have been conducted over the last two decades.…

Software Engineering · Computer Science 2019-08-19 Satnam Kaur , Paramvir Singh

To accelerate software development, much research has been performed to help people understand and reuse the huge amount of available code resources. Two important tasks have been widely studied: code retrieval, which aims to retrieve code…

Software Engineering · Computer Science 2019-04-02 Ziyu Yao , Jayavardhan Reddy Peddamail , Huan Sun

The discoverability, attribution, and reusability of open research software are often hindered by its obscurity within academic manuscripts. To address this, the SoFAIR project (2024-2025) introduces a comprehensive workflow leveraging…

Software Engineering · Computer Science 2025-08-05 Matteo Cancellieri , Martin Docekal , David Pride , Morane Gruenpeter , David Douard , Petr Knoth

Reliable identification of bird species in recorded audio files would be a transformative tool for researchers, conservation biologists, and birders. In recent years, artificial neural networks have greatly improved the detection quality of…

Computer Vision and Pattern Recognition · Computer Science 2018-04-20 Stefan Kahl , Thomas Wilhelm-Stein , Holger Klinck , Danny Kowerko , Maximilian Eibl

Software is an important tool for scholarly work, but software produced for research is in many cases not easily identifiable or discoverable. A potential first step in linking research and software is software identification. In this paper…

Digital Libraries · Computer Science 2023-03-01 Eva Maxfield Brown , Lindsey Schwartz , Richard Lewei Huang , Nicholas Weber

We present components of an AI-assisted academic writing system including citation recommendation and introduction writing. The system recommends citations by considering the user's current document context to provide relevant suggestions.…

Artificial Intelligence · Computer Science 2025-03-19 Daniel J. Liebling , Malcolm Kane , Madeleine Grunde-Mclaughlin , Ian J. Lang , Subhashini Venugopalan , Michael P. Brenner

In recent years, open-source software (OSS) has become increasingly prevalent in developing software products. While OSS documentation is the primary source of information provided by the developers' community about a product, its role in…

Software Engineering · Computer Science 2024-03-07 Aaron Imani , Shiva Radmanesh , Iftekhar Ahmed , Mohammad Moshirpour

Financial fraud detection is an important problem with a number of design aspects to consider. Issues such as algorithm selection and performance analysis will affect the perceived ability of proposed solutions, so for auditors and…

Cryptography and Security · Computer Science 2016-01-07 J. West , Maumita Bhattacharya

Software technology has high impact on the global economy as in many sectors of contemporary society. As a product enabling the most varied daily activities, the software product has to be produced reflecting high quality. Software quality…

Software Engineering · Computer Science 2022-01-24 Rogerio Rossi , Kechi Hirama

Foundation models (FMs) have achieved significant success across various tasks, leading to research on benchmarks for reasoning abilities. However, there is a lack of studies on FMs performance in exceptional scenarios, which we define as…

Artificial Intelligence · Computer Science 2024-12-06 Suho Kang , Jungyang Park , Joonseo Ha , SoMin Kim , JinHyeong Kim , Subeen Park , Kyungwoo Song

Much of the software we use in everyday life consists of distributed components (running on separate cores or even computers) that collaborate through communication (by exchanging messages). It is crucial to develop robust methods that can…

Logic in Computer Science · Computer Science 2024-03-04 Bas van den Heuvel

Prepared domain specific datasets plays an important role to supervised learning approaches. In this article a new sentence dataset for software quality-in-use is proposed. Three experts were chosen to annotate the data using a proposed…

Software Engineering · Computer Science 2015-09-21 Issa Atoum , Chih How Bong , Narayanan Kulathuramaiyer

Today, software systems have a significant role in various domains among which are healthcare, entertainment, transport and logistics, and many more. It is only natural that with this increasing dependency on software, the number of…

Software Engineering · Computer Science 2022-12-23 Filip Zamfirov

Citation recommendation systems for the scientific literature, to help authors find papers that should be cited, have the potential to speed up discoveries and uncover new routes for scientific exploration. We treat this task as a ranking…

Information Retrieval · Computer Science 2020-01-24 Rodrigo Nogueira , Zhiying Jiang , Kyunghyun Cho , Jimmy Lin

Despite years of research for improving accuracy, software practitioners still face software estimation difficulties. Expert judgment has been the prevalent method used in industry, and researchers' focus on raising realism in estimates…

Software Engineering · Computer Science 2021-05-18 Patricia Matsubara , Igor Steinmacher , Bruno Gadelha , Tayana Conte

Machine learning algorithms are highly useful for the classification of time series data in astronomy in this era of peta-scale public survey data releases. These methods can facilitate the discovery of new unknown events in most…

Instrumentation and Methods for Astrophysics · Physics 2018-09-10 J. B. Cabral , B. Sánchez , F. Ramos , S. Gurovich , P. Granitto , J. Vanderplas
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