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We report a realization of an associative memory signal/information processing system based on simple enzyme-catalyzed biochemical reactions. Optically detected chemical output is always obtained in response to the triggering input, but the…

Molecular Networks · Quantitative Biology 2013-04-23 Vera Bocharova , Kevin MacVittie , Soujanya Chinnapareddy , Jan Halamek , Vladimir Privman , Evgeny Katz

Precise control of surface properties including electrical characteristics, wettability, and friction is a prerequisite for manufacturing modern organic electronic devices. The successful combination of bottom up approaches for aligning and…

Materials Science · Physics 2011-07-05 G. Hlawacek , Q. Shen , C. Teichert , A. Lex , G. Trimmel , W. Kern

Metastatic cancer cells detect the direction of lymphatic flow by self-communication: they secrete and detect a chemical which, due to the flow, returns to the cell surface anisotropically. The secretion rate is low, meaning detection noise…

Biological Physics · Physics 2020-07-14 Sean Fancher , Michael Vennettilli , Nicholas Hilgert , Andrew Mugler

Constructing physical models of living cells and tissues is an extremely challenging task because of the high complexities of both intra- and intercellular processes. In addition, the force that a single cell generates vanishes in total due…

Soft Condensed Matter · Physics 2019-05-09 Mitsusuke Tarama , Kenji Mori , Ryoichi Yamamoto

On the microscopic level, biological signal transmission relies on coordinated structural changes in allosteric proteins that involve sensor and effector modules. The timescales and microscopic details of signal transmission in proteins are…

Soft Condensed Matter · Physics 2024-03-20 Anil Kumar Sahoo , Richard Schwarzl , Markus S. Miettinen , Roland R. Netz

In this work we show how a network inspired by a coarse-grained description of actomyosin cytoskeleton can learn - in a contrastive learning framework - from environmental perturbations if it is endowed with mechanosensitive proteins and…

Nonlinear systems driven by recurrent signals are known to exhibit complex dynamical responses which, in the physiological context, can have important functional consequences. One of the simplest biological systems that is exposed to such…

Subcellular Processes · Quantitative Biology 2018-07-04 Tanmay Mitra , Shakti N. Menon , Sitabhra Sinha

The generic problem of extracting information on intrinsic particle properties from the whole class of interacting magnetic fine particle systems is a long standing and difficult inverse problem. As an example, the Switching Field…

Materials Science · Physics 2016-11-29 Sergiu Ruta , Ondrej Hovorka , Pin-Wei Huang , Kangkang Wang , Ganping Ju , Roy Chantrell

Understanding how molecular machines transduce mechanical force into chemical signals is a central goal in chemistry. The mechanosensitive ion channel Piezo1 is an archetypal nanoscale mechanotransducer, but the molecular principles by…

Molecular Networks · Quantitative Biology 2025-12-22 Yuling Zhang , Lei Kang , Yancong Zhang , Guohui Hu

The kinetic features of secondary magnetic reconnection in a single flux rope undergoing internal kink instability are studied by means of three-dimensional Particle-in-Cell simulations. Several signatures of secondary magnetic reconnection…

Plasma Physics · Physics 2015-06-22 S. Markidis , G. Lapenta , G. L. Delzanno , P. Henri , M. V. Goldman , D. L. Newman , T. Intrator , E. Laure

Phosphorelays are a class of signaling mechanisms used by cells to respond to changes in their environment. Phosphorelays (of which two-component systems constitute a special case) are particularly abundant in prokaryotes and have been…

Molecular Networks · Quantitative Biology 2011-09-26 Michael Knudsen , Elisenda Feliu , Carsten Wiuf

Nascent adhesions are submicron transient structures promoting the early adhesion of cells to the extracellular matrix. Nascent adhesions typically consist of several tens of integrins, and serve as platforms for the recruitment and…

Subcellular Processes · Quantitative Biology 2021-01-19 Henning Stumpf , Andreja Ambriović-Ristov , Aleksandra Radenovic , Ana-Sunčana Smith

Self-assembly and force generation are two central processes in biological systems that usually are considered in separation. However, the signals that activate non-muscle myosin II molecular motors simultaneously lead to self-assembly into…

Biomolecules · Quantitative Biology 2020-02-12 Justin Grewe , Ulrich S. Schwarz

Mechanochemical coupling was studied for two different types of myosin motors in cells: myosin V, which carries cargo over long distances by as a single molecule; and myosin II, which generates a contracting force in cooperation with other…

Subcellular Processes · Quantitative Biology 2009-11-13 Masatoshi Nishikawa , Hiroaki Takagi , Atsuko H. Iwane , Toshio Yanagida

Force fluctuations exhibited in focal adhesions (FAs) that connect a cell to its extracellular environment, point to the complex role of the underlying machinery that controls cell migration. To elucidate the explicit role of myosin motors…

Biological Physics · Physics 2022-03-29 Debsuvra Ghosh , Subhadip Ghosh , Abhishek Chaudhuri

Ferrogels and magnetic elastomers feature mechanical properties that can be reversibly tuned from outside through magnetic fields. Here we concentrate on the question how their dynamic response can be adjusted. The influence of three…

Soft Condensed Matter · Physics 2014-10-24 Mitsusuke Tarama , Peet Cremer , Dmitry Y. Borin , Stefan Odenbach , Hartmut Löwen , Andreas M. Menzel

Myxococcus xanthus is a model organism for studying bacterial social behaviors due to its ability to form complex multi-cellular structures. Knowledge of M. xanthus surface gliding motility and the mechanisms that coordinate it are…

The friction and adhesion between elastic bodies are strongly influenced by the roughness of the surfaces in contact. Here we develop a multiscale molecular dynamics approach to contact mechanics, which can be used also when the surfaces…

Soft Condensed Matter · Physics 2007-05-23 C. Yang , U. Tartaglino , B. N. J. Persson

Interpersonal touch is an important channel of social emotional interaction. How these physical skin-to-skin touch expressions are processed in the peripheral nervous system is not well understood. From microneurography recordings in…

Observations of single epidermal cells on flat adhesive substrates have revealed two distinct morphological and functional states, namely a non-migrating symmetric unpolarized state and a migrating asymmetric polarized state. These states…

Biological Physics · Physics 2010-04-14 Wolfgang Alt , Martin Bock , Christoph Möhl