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Multiple sequence alignment (MSA) is a ubiquitous problem in computational biology. Although it is NP-hard to find an optimal solution for an arbitrary number of sequences, due to the importance of this problem researchers are trying to…

Artificial Intelligence · Computer Science 2011-09-29 S. Schroedl

Estimating ranks, quantiles, and distributions over streaming data is a central task in data analysis and monitoring. Given a stream of $n$ items from a data universe equipped with a total order, the task is to compute a sketch (data…

Data Structures and Algorithms · Computer Science 2023-08-25 Graham Cormode , Zohar Karnin , Edo Liberty , Justin Thaler , Pavel Veselý

We consider the classical Minimum Balanced Cut problem: given a graph $G$, compute a partition of its vertices into two subsets of roughly equal volume, while minimizing the number of edges connecting the subsets. We present the first {\em…

Data Structures and Algorithms · Computer Science 2020-05-05 Julia Chuzhoy , Yu Gao , Jason Li , Danupon Nanongkai , Richard Peng , Thatchaphol Saranurak

We present a randomized $O(m \log^2 n)$ work, $O(\text{polylog } n)$ depth parallel algorithm for minimum cut. This algorithm matches the work bounds of a recent sequential algorithm by Gawrychowski, Mozes, and Weimann [ICALP'20], and…

Data Structures and Algorithms · Computer Science 2021-12-30 Daniel Anderson , Guy E. Blelloch

We study a ranking and selection problem of learning from choice-based feedback with dynamic assortments. In this problem, a company sequentially displays a set of items to a population of customers and collects their choices as feedback.…

Machine Learning · Computer Science 2025-01-03 Junwen Yang , Yifan Feng

Ranking over sets arise when users choose between groups of items. For example, a group may be of those movies deemed $5$ stars to them, or a customized tour package. It turns out, to model this data type properly, we need to investigate…

Machine Learning · Computer Science 2014-08-04 Truyen Tran , Dinh Phung , Svetha Venkatesh

The maximum labelled clique problem is a variant of the maximum clique problem where edges in the graph are given labels, and we are not allowed to use more than a certain number of distinct labels in a solution. We introduce a new…

Data Structures and Algorithms · Computer Science 2014-11-18 Ciaran McCreesh , Patrick Prosser

In this paper, we bring the main tools of the Laplacian paradigm to the Broadcast Congested Clique. We introduce an algorithm to compute spectral sparsifiers in a polylogarithmic number of rounds, which directly leads to an efficient…

Data Structures and Algorithms · Computer Science 2022-05-25 Sebastian Forster , Tijn de Vos

Probabilistic sampling methods have become very popular to solve single-shot path planning problems. Rapidly-exploring Random Trees (RRTs) in particular have been shown to be very efficient in solving high dimensional problems. Even though…

Artificial Intelligence · Computer Science 2009-12-03 Nicolas A. Barriga , Mauricio Araya-López , Mauricio Solar

The Beeping Network (BN) model captures important properties of biological processes. Paradoxically, the extremely limited communication capabilities of such nodes has helped BN become one of the fundamental models for networks. Since in…

Distributed, Parallel, and Cluster Computing · Computer Science 2025-02-20 Pawel Garncarek , Dariusz R. Kowalski , Shay Kutten , Miguel A. Mosteiro

The method for analyzing algorithmic runtime complexity using decision trees is discussed using the sorting algorithm. This method is then extended to optimal algorithms which may find all cliques of size q in network N, or simply the first…

Computational Complexity · Computer Science 2025-05-09 Daniel Uribe

We consider the problem of minimizing the total cost to run a sequence of $n$ tasks in the given order by $k$ agents under the positional cost model. The cost to run a task not only depends on the intrinsic cost of the task itself, but also…

Data Structures and Algorithms · Computer Science 2014-04-23 Bojun Huang

Resource constrained project scheduling is an important combinatorial optimisation problem with many practical applications. With complex requirements such as precedence constraints, limited resources, and finance-based objectives, finding…

Neural and Evolutionary Computing · Computer Science 2022-10-21 Dhananjay R. Thiruvady , Su Nguyen , Christian Blum , Andreas T. Ernst

In the minimum cost submodular cover problem (MinSMC), we are given a monotone nondecreasing submodular function $f\colon 2^V \rightarrow \mathbb{Z}^+$, a linear cost function $c: V\rightarrow \mathbb R^{+}$, and an integer $k\leq f(V)$,…

Data Structures and Algorithms · Computer Science 2022-06-16 Yingli Ran , Zhao Zhang , Shaojie Tang

We consider the problem of designing fundamental graph algorithms on the model of Massive Parallel Computation (MPC). The input to the problem is an undirected graph $G$ with $n$ vertices and $m$ edges, and with $D$ being the maximum…

Data Structures and Algorithms · Computer Science 2021-08-10 Sam Coy , Artur Czumaj

We present a deterministic sorting algorithm, SPMS (Sample, Partition, and Merge Sort), that interleaves the partitioning of a sample sort with merging. Sequentially, it sorts $n$ elements in $O(n \log n)$ time cache-obliviously with an…

Data Structures and Algorithms · Computer Science 2017-11-03 Richard Cole , Vijaya Ramachandran

A long-standing open question in information theory is to characterize the unicast capacity of a wireless relay network. The difficulty arises due to the complex signal interactions induced in the network, since the wireless channel…

Data Structures and Algorithms · Computer Science 2009-09-29 Javad Ebrahimi , Christina Fragouli

We consider the problem of computing a maximal matching with a distributed algorithm in the presence of batch-dynamic changes to the graph topology. We assume that a graph of $n$ nodes is vertex-partitioned among $k$ players that…

Distributed, Parallel, and Cluster Computing · Computer Science 2024-01-30 Minming Li , Peter Robinson , Xianbin Zhu

We present a deterministic algorithm for solving a wide range of dynamic programming problems in trees in $O(\log D)$ rounds in the massively parallel computation model (MPC), with $O(n^\delta)$ words of local memory per machine, for any…

Distributed, Parallel, and Cluster Computing · Computer Science 2023-05-08 Chetan Gupta , Rustam Latypov , Yannic Maus , Shreyas Pai , Simo Särkkä , Jan Studený , Jukka Suomela , Jara Uitto , Hossein Vahidi

Sequential minimum optimization is a machine-learning global search training algorithm. It is applicable when the functional dependence of the cost function on a tunable parameter given the other parameters can be cheaply determined. This…

Quantum Physics · Physics 2023-03-03 Wojciech Roga , Takafumi Ono , Masahiro Takeoka
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