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Assessing predictive models can be challenging. Modelers must navigate a wide array of evaluation methodologies implemented with incompatible interfaces across multiple packages which may give different or even contradictory results, while…

Mathematical Software · Computer Science 2023-03-21 Michael J Mahoney

We introduce the `nhppp' package for simulating events from one-dimensional non-homogeneous Poisson point processes (NHPPPs) in R fast and with a small memory footprint. We developed it to facilitate the sampling of event times in discrete…

Computation · Statistics 2024-05-30 Thomas A. Trikalinos , Yuliia Sereda

As an alternative to using administrative areas for the evaluation of small-area health inequalities, Sauzet et al. suggested to take an ego-centred approach and model the spatial correlation structure of health outcomes at the individual…

Computation · Statistics 2024-05-14 Julia Dyck , Jan-Ole Koslik , Odile Sauzet

This document describes an infra-structure provided by the R package performanceEstimation that allows to estimate the predictive performance of different approaches (workflows) to predictive tasks. The infra-structure is generic in the…

Mathematical Software · Computer Science 2015-09-08 Luis Torgo

In this paper, we present a new R package COREclust dedicated to the detection of representative variables in high dimensional spaces with a potentially limited number of observations. Variable sets detection is based on an original graph…

Mathematical Software · Computer Science 2018-05-28 Camille Champion , Anne-Claire Brunet , Jean-Michel Loubes , Laurent Risser

We present PlanetPack, a new software tool that we developed to facilitate and standardize the advanced analysis of radial velocity (RV) data for the goal of exoplanets detection, characterization, and basic dynamical $N$-body simulations.…

Instrumentation and Methods for Astrophysics · Physics 2013-08-06 Roman V. Baluev

FRK is an R software package for spatial/spatio-temporal modelling and prediction with large datasets. It facilitates optimal spatial prediction (kriging) on the most commonly used manifolds (in Euclidean space and on the surface of the…

Computation · Statistics 2018-06-11 Andrew Zammit-Mangion , Noel Cressie

Quantifying spatial and/or temporal associations in multivariate geolocated data of different types is achievable via spatial random effects in a Bayesian hierarchical model, but severe computational bottlenecks arise when spatial…

Methodology · Statistics 2024-04-02 Michele Peruzzi , David B. Dunson

Partially observed Markov process (POMP) models, also known as hidden Markov models or state space models, are ubiquitous tools for time series analysis. The R package pomp provides a very flexible framework for Monte Carlo statistical…

Methodology · Statistics 2021-05-27 Aaron A. King , Dao Nguyen , Edward L. Ionides

Many very large-scale systems are networks of cyber-physical systems in which humans and autonomous software agents cooperate. To make the cooperation safe for the humans involved, the systems have to follow protocols with rigid real-time…

Software Engineering · Computer Science 2024-10-21 Heinz Schmidt , Peter Herrmann , Maria Spichkova , James Harland , Ian Peake , Ergys Puka

Non-Gaussian spatial and spatio-temporal data are becoming increasingly prevalent, and their analysis is needed in a variety of disciplines. FRK is an R package for spatial/spatio-temporal modelling and prediction with very large data sets…

Computation · Statistics 2022-11-22 Matthew Sainsbury-Dale , Andrew Zammit-Mangion , Noel Cressie

Correlation and smoothness are terms used to describe a wide variety of random quantities. In time, space, and many other domains, they both imply the same idea: quantities that occur closer together are more similar than those further…

Methodology · Statistics 2020-06-11 David L Miller , Richard Glennie , Andrew E Seaton

In this article, we present a recently released R package for Bayesian calibration. Many industrial fields are facing unfeasible or costly field experiments. These experiments are replaced with numerical/computer experiments which are…

Computation · Statistics 2018-08-30 Mathieu Carmassi , Pierre Barbillon , Matthieu Chiodetti , Merlin Keller , Eric Parent

Spatio-temporal covariances are important for describing the spatio-temporal variability of underlying random processes in geostatistical data. For second-order stationary processes, there exist subclasses of covariance functions that…

Applications · Statistics 2017-05-05 Huang Huang , Ying Sun

The idea of spatial crosscorrelation was conceived of long ago. However, unlike the related spatial autocorrelation, the theory and method of spatial crosscorrelation analysis have remained undeveloped. This paper presents a set of models…

Physics and Society · Physics 2018-12-19 Yanguang Chen

Package spar for R builds ensembles of predictive generalized linear models with high-dimensional predictors. It employs an algorithm utilizing variable screening and random projection tools to efficiently handle the computational…

Computation · Statistics 2024-11-28 Roman Parzer , Laura Vana-Gür , Peter Filzmoser

Recognizing spatial relations and reasoning about them is essential in multiple applications including navigation, direction giving and human-computer interaction in general. Spatial relations between objects can either be explicit --…

Computation and Language · Computer Science 2020-07-21 Soham Dan , Hangfeng He , Dan Roth

This paper describes and illustrates functionality of the spNNGP R package. The package provides a suite of spatial regression models for Gaussian and non-Gaussian point-referenced outcomes that are spatially indexed. The package implements…

Computation · Statistics 2021-04-16 Andrew O. Finley , Abhirup Datta , Sudipto Banerjee

Correlation among the observations in high-dimensional regression modeling can be a major source of confounding. We present a new open-source package, plmmr, to implement penalized linear mixed models in R. This R package estimates…

Computation · Statistics 2026-05-13 Tabitha K. Peter , Anna C. Reisetter , Yujing Lu , Oscar A. Rysavy , Patrick J. Breheny

A spatial point process can be characterized by an intensity function which predicts the number of events that occur across space. In this paper, we develop a method to infer predictive intensity intervals by learning a spatial model using…

Machine Learning · Statistics 2020-07-06 Muhammad Osama , Dave Zachariah , Petre Stoica
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