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The dynamic behavior of bundles of actin filaments growing against a loaded obstacle is investigated through a generalized version of the standard multi filaments Brownian Ratchet model in which the (de)polymerizing filaments are treated…

Biological Physics · Physics 2019-05-22 Alessia Perilli , Carlo Pierleoni , Jean-Paul Ryckaert

We present a generalisation of efficient numerical frameworks for modelling fluid-filament interactions via the discretisation of a recently-developed, non-local integral equation formulation to incorporate regularised Stokeslets with…

Fluid Dynamics · Physics 2019-10-02 Benjamin J. Walker , Kenta Ishimoto , Hermes Gadêlha , Eamonn A. Gaffney

By equilibrating condensed DNA arrays against reservoirs of known osmotic stress and examining them with several structural probes, it has been possible to achieve a detailed thermodynamic and structural characterization of the change…

chem-ph · Physics 2009-10-28 R. Podgornik , H. H. Strey , K. Gawrisch , D. C. Rau , A. Rupprecht , V. A. Parsegian

Flagella and cilia are examples of actively oscillating, whiplike biological filaments that are crucial to processes as diverse as locomotion, mucus clearance, embryogenesis and cell motility. Elastic driven rod-like filaments subjected to…

Computational Physics · Physics 2018-05-24 Soheil Fatehiboroujeni , Arvind Gopinath , Sachin Goyal

Silicene is an intriguing silicon allotrope with a honeycomb lattice structure similar to graphene with slightly buckled geometry. Molybdenum disulfide (MoS2), on the other hand, is a significant 2D transition metal dichalcogenide that has…

Materials Science · Physics 2024-06-18 Bishwajit Kar , Plabon Paul , Md Arshadur Rahman , Mohammad Jane Alam Khan

The physical basis of flagellar and ciliary beating is a major problem in biology which is still far from completely understood. The fundamental cytoskeleton structure of cilia and flagella is the axoneme, a cylindrical array of microtubule…

Biological Physics · Physics 2017-03-10 David Oriola , Hermes Gadêlha , Jaume Casademunt

Deformations that conserve the parallelism and the distances --between layers, in smectic phases; between columns, in columnar phases-- are commonplace in liquid crystals. The resulting deformed textures have the same mass density as in the…

Soft Condensed Matter · Physics 2015-06-24 M. -F. Achard , M. Kleman , Yu. A. Nastishin , H. -T. Nguyen

We report the spontaneous generation of an Archimedean spiral pattern of fullerene via the evaporation of solvent. The self-organized spiral pattern exhibited equi-spacing on the order of micrometer between neighboring stripes. The…

Soft Condensed Matter · Physics 2013-03-19 Yong-Jun Chen , Kosuke Suzuki , Hitoshi Mahara , Kenichi Yoshikawa , Tomohiko Yamaguchi

Colloidal molecules are designed to mimic their molecular analogues through their anisotropic shape and interactions. However, current experimental realizations are missing the structural flexibility present in real molecules thereby…

The actin cytoskeleton of adherent tissue cells often condenses into filament bundles contracted by myosin motors, so-called stress fibers, which play a crucial role in the mechanical interaction of cells with their environment. Stress…

Subcellular Processes · Quantitative Biology 2015-05-27 Achim Besser , Julien Colombelli , Ernst H. K. Stelzer , Ulrich S. Schwarz

We report on localized patches of cellular hexagons observed on the surface of a magnetic fluid in a vertical magnetic field. These patches are spontaneously generated by jumping into the neighborhood of the unstable branch of the domain…

Pattern Formation and Solitons · Physics 2015-09-25 David J. B. Lloyd , Christian Gollwitzer , Ingo Rehberg , Reinhard Richter

The observation of novel physical phenomena such as Hofstadter's butterfly, topological currents and unconventional superconductivity in graphene have been enabled by the replacement of SiO$_2$ with hexagonal Boron Nitride (hBN) as a…

Mesoscale and Nanoscale Physics · Physics 2019-01-18 Adolfo De Sanctis , Jake D. Mehew , Saad Alkhalifa , Freddie Withers , Monica F. Craciun , Saverio Russo

Conventional X-ray methods use incoming plane waves and result in discrete diffraction patterns when scattered at crystals. Here we find, by a systematic method, incoming waveforms which exhibit discrete diffraction patterns when scattered…

Optics · Physics 2015-06-16 Gero Friesecke , Richard D. James , Dominik Jüstel

Lattice reconstruction and corresponding strain accumulation play a key role in defining the electronic structure of two-dimensional moir\'e superlattices, including those of transition metal dichalcogenides (TMDs). Imaging of TMD moir\'es…

Many swimming microorganisms, such as bacteria and sperm, use flexible flagella to move through viscoelastic media in their natural environments. In this paper we address the effects a viscoelastic fluid has on the motion and beating…

Soft Condensed Matter · Physics 2009-11-13 Henry C. Fu , Charles W. Wolgemuth , Thomas R. Powers

We investigate stall force and polymerization kinetics of rigid protofilaments in a microtubule or interacting filaments in bundles under an external load force in the framework of a discrete growth model. We introduce the concecpt of…

Statistical Mechanics · Physics 2011-02-11 Jaroslaw Krawczyk , Jan Kierfeld

An adhesively stressed thin film of a soft hydrogel confined between two rigid flat substrates auto-roughens with its dominant wavelength exhibiting pronounced dependence on the film thickness (H). A linear stability analysis confirmed that…

Soft Condensed Matter · Physics 2014-01-29 Aditi Chakrabarti , Manoj K. Chaudhury

We present the Smoothed Hessian Major Axis Filament Finder (SHMAFF), an algorithm that uses the eigenvectors of the Hessian matrix of the smoothed galaxy distribution to identify individual filamentary structures. Filaments are traced along…

Cosmology and Nongalactic Astrophysics · Physics 2015-05-18 Nicholas A. Bond , Michael A. Strauss , Renyue Cen

Elongation is a fundament process in amyloid fiber growth, which is normally characterized by a linear relationship between the fiber elongation rate and the monomer concentration. However, in high concentration regions, a sub-linear…

Quantitative Methods · Quantitative Biology 2020-11-13 Liu Hong , Xizhou Liu , Thomas C. T. Michaels , Tuomas P. J. Knowles

The tubulin-like protein FtsZ is crucial for cytokinesis in bacteria and many archaea, forming a ring-shaped structure called the Z-ring at the site of cell division. Despite extensive research, the self-assembly of Z-rings is not entirely…

Biological Physics · Physics 2025-02-17 Rajneesh Kumar , Ramanujam Srinivasan , Debasish Chaudhuri