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While the structure of chromatin has been studied in great detail on length scales below 30 nm, amazingly little is known about the higher-order folding motifs of chromatin in interphase. Recent experiments give evidence that the folding…

Soft Condensed Matter · Physics 2009-02-16 Manfred Bohn , Dieter W. Heermann , Roel van Driel

We consider the number of crossings in a random embedding of a graph, $G$, with vertices in convex position. We give explicit formulas for the mean and variance of the number of crossings as a function of various subgraph counts of $G$.…

Probability · Mathematics 2024-10-14 Santiago Arenas-Velilla , Octavio Arizmendi , J. E. Paguyo

Understanding the effects of the choice of the tree on the joint distribution of a tree-structured Markov random field (MRF) is crucial for fully exploiting the intelligibility of such probabilistic graphical models. Tools must be developed…

Statistics Theory · Mathematics 2025-09-03 Benjamin Côté , Hélène Cossette , Etienne Marceau

Statistical inference for exponential-family models of random graphs with dependent edges is challenging. We stress the importance of additional structure and show that additional structure facilitates statistical inference. A simple…

Statistics Theory · Mathematics 2020-03-13 Michael Schweinberger , Jonathan Stewart

The richness of many complex systems stems from the interactions among their components. The higher-order nature of these interactions, involving many units at once, and their temporal dynamics constitute crucial properties that shape the…

Physics and Society · Physics 2024-07-29 Marco Mancastroppa , Iacopo Iacopini , Giovanni Petri , Alain Barrat

In a graph, the minimum cycle bases are a set of linearly independent cycles that can be used to represent any cycle within that cycle space of graph. These bases are useful in various contexts, including the intricate analysis of…

Physics and Society · Physics 2025-04-22 Yuanbiao Li , Tingyu Wang , Yu Zhao , Bo Yang

Random walks find applications in many areas of science and are the heart of essential network analytic tools. When defined on temporal networks, even basic random walk models may exhibit a rich spectrum of behaviours, due to the…

Physics and Society · Physics 2019-11-11 Julien Petit , Renaud Lambiotte , Timoteo Carletti

We consider a broad class of walk-based, parameterized node centrality measures for network analysis. These measures are expressed in terms of functions of the adjacency matrix and generalize various well-known centrality indices, including…

Numerical Analysis · Mathematics 2015-07-09 Michele Benzi , Christine Klymko

One of the more recent measures of centrality in social network analysis is the normalized harmonic centrality. A variant of the closeness centrality, harmonic centrality sums the inverse of the geodesic distances of each node to other…

Discrete Mathematics · Computer Science 2022-04-05 Jose Mari E. Ortega , Rolito G. Eballe

Models of street networks underlie research in urban travel behavior, accessibility, design patterns, and morphology. These models are commonly defined as planar, meaning they can be represented in two dimensions without any underpasses or…

Physics and Society · Physics 2018-11-21 Geoff Boeing

We consider random graphs sampled uniformly from a structured class of graphs, such as the class of graphs embeddable in a given surface. We sharpen and extend earlier results on pendant appearances, concerning for example numbers of…

Combinatorics · Mathematics 2024-05-07 Colin McDiarmid

Random walks represent an important tool for probing the structural and dynamical properties of networks and modeling transport and diffusion processes on networks. However, when individuals' movement becomes dictated by more complicated…

Pattern Formation and Solitons · Physics 2022-11-24 Per Sebastian Skardal

In this article we consider a natural class of random walks on free products of graphs, which arise as convex combinations of random walks on the single factors. From the works of Gilch [6,7] it is well-known that for these random walks the…

Probability · Mathematics 2025-10-21 Lorenz A. Gilch

Random spatial networks-that is, graphs whose connectivity is governed by geometric proximity-have emerged as fundamental models for systems constrained by an underlying spatial structure. A prototypical example is the random geometric…

Probability · Mathematics 2026-02-20 Christian Hirsch , Kyeongsik Nam , Moritz Otto

Triangle centrality is introduced for finding important vertices in a graph based on the concentration of triangles surrounding each vertex. It has the distinct feature of allowing a vertex to be central if it is in many triangles or none…

Data Structures and Algorithms · Computer Science 2024-10-16 Paul Burkhardt

In this paper we revisit the concept of mobility entropy. Over time, the structure of spatial interactions among urban centres tends to become more complex and evolves from centralised models to more scattered origin and destination…

Physics and Society · Physics 2021-06-30 Valentina Marin , Carlos Molinero , Elsa Arcaute

The roles of different nodes within a network are often understood through centrality analysis, which aims to quantify the capacity of a node to influence, or be influenced by, other nodes via its connection topology. Many different…

Social and Information Networks · Computer Science 2020-07-01 Stuart Oldham , Ben Fulcher , Linden Parkes , Aurina Arnatkeviciute , Chao Suo , Alex Fornito

Betweenness centrality ranks the importance of nodes by their participation in all shortest paths of the network. Therefore computing exact betweenness values is impractical in large networks. For static networks, approximation based on…

Social and Information Networks · Computer Science 2014-09-23 Elisabetta Bergamini , Henning Meyerhenke , Christian L. Staudt

Over the last two decades, network theory has shown to be a fruitful paradigm in understanding the organization and functioning of real-world complex systems. One technique helpful to this endeavor is identifying functionally influential…

Physics and Society · Physics 2022-01-24 Francesco Picciolo , Franco Ruzzenenti , Petter Holme , Rossana Mastrandrea

Today, there exist many centrality measures for assessing the importance of nodes in a network as a function of their position and the underlying topology. One class of such measures builds on eigenvector centrality, where the importance of…

Social and Information Networks · Computer Science 2020-02-28 James B Glattfelder