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Evolution in time-varying environments naturally leads to adaptable biological systems that can easily switch functionalities. Advances in the synthesis of environmentally-responsive materials therefore open up the possibility of creating a…

Two new constructions are presented for coils and snakes in the hypercube. Improvements are made on the best known results for snake-in-the-box coils of dimensions 9, 10 and 11, and for some other circuit codes of dimensions between 8 and…

Combinatorics · Mathematics 2012-01-10 Ed Wynn

We show that logic computational circuits in gene regulatory networks arise from a fibration symmetry breaking in the network structure. From this idea we implement a constructive procedure that reveals a hierarchy of genetic circuits,…

Genomics · Quantitative Biology 2020-06-25 Ian Leifer , Flaviano Morone , Saulo D. S. Reis , Jose S. Andrade , Mariano Sigman , Hernan A. Makse

In an array of coupled cavities where the cavities are doped with an atomic V-system, and the two excited levels couple to cavity photons of different polarizations, we show how to construct various spin models employed in characterizing…

Quantum Physics · Physics 2009-11-13 Alastair Kay , Dimitris G. Angelakis

The precise sequence of aminoacids plays a central role in the tertiary structure of proteins and their functional properties. The Hydrophobic-Polar lattice models have provided valuable insights regarding the energy landscape. We…

Biomolecules · Quantitative Biology 2015-03-30 K. Silpaja Chandrasekar , M. V. Sangaranarayanan

In the present work, we propose a new set of coherent structures that arise in nonlinear dynamical lattices with more than one components, namely interlaced solitons. These are waveforms in which in the relevant anti-continuum limit, i.e.…

Pattern Formation and Solitons · Physics 2015-05-20 J. Cuevas , Q. E. Hoq , H. Susanto , P. G. Kevrekidis

Vortex coherent structures on arrays of nonlinear oscillators joined by weak links into topologically nontrivial two-dimensional discrete manifolds have been theoretically studied. A circuit of nonlinear electric oscillators coupled by…

Pattern Formation and Solitons · Physics 2020-07-01 Victor P. Ruban

Kitaev's toric code is an exactly solvable model with $\mathbb{Z}_2$-topological order, which has potential applications in quantum computation and error correction. However, a direct experimental realization remains an open challenge.…

Quantum Physics · Physics 2021-08-23 Lukas Homeier , Christian Schweizer , Monika Aidelsburger , Arkady Fedorov , Fabian Grusdt

We demonstrate experimentally the generation of square and hexagonal lattices of optical vortices and reveal their propagation in a saturable nonlinear medium. If the topological charges of the vortices are of the same sign the lattice…

Pattern Formation and Solitons · Physics 2009-11-07 Alexander Dreischuh , Sotir Chervenkov , Dragomir Neshev , Gerhard G. Paulus , Herbert Walther

The temporal activity of many biological systems, including neural circuits, exhibits fluctuations simultaneously varying over a large range of timescales. The mechanisms leading to this temporal heterogeneity are yet unknown. Here we show…

Disordered Systems and Neural Networks · Physics 2022-08-03 Merav Stern , Nicolae Istrate , Luca Mazzucato

The regular structures obtained by optical lattice technology and their behaviour are analysed from the quantum information perspective. Initially, we demonstrate that a triangular optical lattice of two atomic species, bosonic or…

Quantum simulations is a promising field where a controllable system is used to mimic another system of interest, whose properties one wants to investigate. One of the key issues for such simulations is the ability to control the…

Quantum Physics · Physics 2019-03-20 Anette Messinger , Bruno G. Taketani , Frank K. Wilhelm

We propose several designs to simulate quantum many-body systems in manifolds with a non-trivial topology. The key idea is to create a synthetic lattice combining real-space and internal degrees of freedom via a suitable use of induced…

Coarse-grained molecular-dynamics simulations were used to study the morphological changes induced in a Nafion$^{\tiny \textregistered}$-like ionomer by the imposition of a strong electric field. We observe the formation of novel structures…

Soft Condensed Matter · Physics 2015-05-13 Elshad Allahyarov , Philip L. Taylor

Two-dimensional hexagonal and oblique lattices were investigated theoretically with the aim of observing differences in the spin expectation values between chiral and achiral systems. The spinresolved band structures were derived from the…

Mesoscale and Nanoscale Physics · Physics 2018-06-19 N. K. Lewis , P. J. Durham , W. R. Flavell , E. A. Seddon

We address the physics of nematic liquid crystalline elastomers randomly crosslinked in the isotropic state. To do this, we construct a phenomenological effective replica Hamiltonian in terms of two order-parameter fields: one for the…

Soft Condensed Matter · Physics 2011-01-10 Bing-Sui Lu , Fangfu Ye , Xiangjun Xing , Paul M. Goldbart

Engineering synthetic dimensions, where the physics of additional spatial dimensions is simulated within the internal states of a quantum system, allows the realisation of phenomena not otherwise accessible in experiments. Ultracold…

Mesogenic materials, quinoxaline derivatives with semi-flexible cores, are reported to form new type of 3D columnar structure with large crystallographic unit cell and Fddd symmetry below columnar hexagonal phase. The 3D columnar structure…

Materials Science · Physics 2021-09-10 Paulina Rybak , Adam Krowczynski , Jadwiga Szydlowska , Damian Pociecha , Ewa Gorecka

A representation of the genetic code as a six-dimensional Boolean hypercube is proposed. It is assumed here that this structure is the result of the hierarchical order of the interaction energies of the bases in codon-anticodon recognition.…

Soft Condensed Matter · Physics 2007-05-23 Miguel A. Jimenez-Montano , Carlos R. de la Mora-Basanez , Thorsten Poeschel

We disclose the generality of the intrinsic mechanisms underlying multistability in reciprocally inhibitory 3-cell circuits composed of simplified, low-dimensional models of oscillatory neurons, as opposed to those of a detailed Hodgkin-…

Adaptation and Self-Organizing Systems · Physics 2020-08-26 J. Collens , K. Pusuluri , A. Kelly , D. Knapper , T. Xing , S. Basodi , D. Alacam , A. L. Shilnikov