Related papers: Maximal cliques structure for cocomparability grap…
A graph is inductive $k$-independent if there exists and ordering of its vertices $v_{1},...,v_{n}$ such that $\alpha(G[N(v_{i})\cap V_{i}])\leq k $ where $N(v_{i})$ is the neighborhood of $v_{i}$, $V_{i}=\{v_{i},...,v_{n}\}$ and $\alpha$…
Many real-world networks, such as transportation or trade networks, are dynamic in the sense that the edge set may change over time, but these changes are known in advance. This behavior is captured by the temporal graphs model, which has…
A graph is CIS if every maximal clique interesects every maximal stable set. Currently, no good characterization or recognition algorithm for the CIS graphs is known. We characterize graphs in which every maximal matching saturates all…
We study the class of 1-perfectly orientable graphs, that is, graphs having an orientation in which every out-neighborhood induces a tournament. 1-perfectly orientable graphs form a common generalization of chordal graphs and circular arc…
Message Passing Neural Networks (MPNNs) are a staple of graph machine learning. MPNNs iteratively update each node's representation in an input graph by aggregating messages from the node's neighbors, which necessitates a memory complexity…
Subgraph complementation is an operation that toggles all adjacencies inside a selected vertex set. Given a graph \(G\) and a target class \(\mathcal{C}\), the Minimum Subgraph Complementation problem asks for a minimum-size vertex set…
Beginning with the concepts of orientation for a 3-hypergraph and transitivity for an oriented 3-hypergraph, it is natural to study the class of comparability 3-hypergraphs (those that can be transitively oriented). In this work we show…
Graph matching, also known as network alignment, refers to finding a bijection between the vertex sets of two given graphs so as to maximally align their edges. This fundamental computational problem arises frequently in multiple fields…
While graphs and abstract data structures can be large and complex, practical instances are often regular or highly structured. If the instance has sufficient structure, we might hope to compress the object into a more succinct…
Considering a clique as a conservative definition of community structure, we examine how graph partitioning algorithms interact with cliques. Many popular community-finding algorithms partition the entire graph into non-overlapping…
Reconstruction of evolutionary relationships between species is an important topic in the field of computational biology. Pairwise compatibility graphs (PCGs) are used to model such relationships. A graph is a PCG if its edges can be…
An $(m, n)$-colored mixed graph is a graph having arcs of $m$ different colors and edges of $n$ different colors. A graph homomorphism of an $(m, n$)-colored mixed graph $G$ to an $(m, n)$-colored mixed graph $H$ is a vertex mapping such…
Quasi-median graphs are a tool commonly used by evolutionary biologists to visualise the evolution of molecular sequences. As with any graph, a quasi-median graph can contain cut vertices, that is, vertices whose removal disconnect the…
For a graph property $\mathcal{P}$ and a common vertex set $V = \{1, 2, \ldots, n\}$, a family of graphs on $V$ is \emph{$\mathcal{P}$-intersecting} iff $G \cap H$ satisfies $\mathcal{P}$ for all $G,H$ in the family. Addressing a question…
Interval graphs and interval orders are deeply linked. In fact, edges of an interval graphs represent the incomparability relation of an interval order, and in general, of different interval orders. The question about the conditions under…
For a graph $H$, a graph $G$ is an $H$-graph if it is an intersection graph of connected subgraphs of some subdivision of $H$. $H$-graphs naturally generalize several important graph classes like interval or circular-arc graph. This class…
We introduce a new concept of a subgraph class called a superbubble for analyzing assembly graphs, and propose an efficient algorithm for detecting it. Most assembly algorithms utilize assembly graphs like the de Bruijn graph or the overlap…
A set of vertices in a graph is c-colorable if the subgraph induced by the set has a proper c-coloring. In this paper, we study the problem of finding a step-by-step transformation (reconfiguration) between two c-colorable sets in the same…
Finding the maximum clique is a known NP-Complete problem and it is also hard to approximate. This work proposes two efficient algorithms to obtain it. Nevertheless, the first one is able to fins the maximum for some special cases, while…
The primary objective of graph pattern matching is to find all appearances of an input graph pattern query in a large data graph. Such appearances are called matches. In this paper, we are interested in finding matches of interaction…