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Recent tumor genome sequencing confirmed that one tumor often consists of multiple cell subpopulations (clones) which bear different, but related, genetic profiles such as mutation and copy number variation profiles. Thus far, one tumor has…

Molecular Networks · Quantitative Biology 2014-09-09 Edwin Wang , Jinfeng Zou , Naif Zaman , Lenore K. Beitel , Mark Trifiro , Miltiadis Paliouras

Recently, Graph Convolutional Networks (GCNs) have proven to be a powerful mean for Computer Aided Diagnosis (CADx). This approach requires building a population graph to aggregate structural information, where the graph adjacency matrix…

Artificial Intelligence · Computer Science 2021-06-17 Hao Chen , Fuzhen Zhuang , Li Xiao , Ling Ma , Haiyan Liu , Ruifang Zhang , Huiqin Jiang , Qing He

Understanding the mechanisms of neural communication in large-scale brain networks remains a major goal in neuroscience. We investigated whether navigation is a parsimonious routing model for connectomics. Navigating a network involves…

Neurons and Cognition · Quantitative Biology 2018-06-05 Caio Seguin , Martijn P. van den Heuvel , Andrew Zalesky

This paper describes how realistic neuromorphic networks can have their connectivity properties fully characterized in analytical fashion. By assuming that all neurons have the same shape and are regularly distributed along the…

Disordered Systems and Neural Networks · Physics 2009-11-10 Luciano da F. Costa

In this paper, we propose an opportunistic network coding (ONC) scheme in cellular relay networks, which operates depending on whether the relay decodes source messages successfully or not. A fully distributed method is presented to…

Information Theory · Computer Science 2016-11-17 Yulong Zou , Jia Zhu , Baoyu Zheng

Extracting physical laws from observation data is a central challenge in many diverse areas of science and engineering. We propose Optimal Control Neural Networks (OCN) to learn the laws of vector fields in dynamical systems, with no…

Dynamical Systems · Mathematics 2023-12-05 Xuping Tian , Baskar Ganapathysubramanian , Hailiang Liu

Network alignment is a problem of finding the node mapping between similar networks. It links the data from separate sources and is widely studied in bioinformation and social network fields. The critical difference between network…

Social and Information Networks · Computer Science 2021-07-26 Hailong Li , Naiyue Chen

Brain connectivity networks, which characterize the functional or structural interaction of brain regions, has been widely used for brain disease classification. Kernel-based method, such as graph kernel (i.e., kernel defined on graphs),…

Machine Learning · Computer Science 2021-01-19 Kai Ma , Biao Jie , Daoqiang Zhang

Neuroscientific data analysis has traditionally relied on linear algebra and stochastic process theory. However, the tree-like shapes of neurons cannot be described easily as points in a vector space (the subtraction of two neuronal shapes…

Computer Vision and Pattern Recognition · Computer Science 2020-04-07 Dingkang Wang , Lucas Magee , Bing-Xing Huo , Samik Banerjee , Xu Li , Jaikishan Jayakumar , Meng Kuan Lin , Keerthi Ram , Suyi Wang , Yusu Wang , Partha P. Mitra

The deep Convolutional Neural Network (CNN) is the state-of-the-art solution for large-scale visual recognition. Following basic principles such as increasing the depth and constructing highway connections, researchers have manually…

Computer Vision and Pattern Recognition · Computer Science 2017-03-07 Lingxi Xie , Alan Yuille

Characterizing large online social networks (OSNs) through node querying is a challenging task. OSNs often impose severe constraints on the query rate, hence limiting the sample size to a small fraction of the total network. Various ad-hoc…

Social and Information Networks · Computer Science 2013-11-14 Pinghui Wang , Bruno Ribeiro , Junzhou Zhao , John C. S. Lui , Don Towsley , Xiaohong Guan

This paper considers distributed coding for multi-source single-sink data collection wireless networks. A unified framework for network coding and channel coding, termed "generalized adaptive network coded cooperation" (GANCC), is proposed.…

Distributed, Parallel, and Cluster Computing · Computer Science 2010-02-22 Xingkai Bao , Jing Li

Recent advances in single cell sequencing and multi-omics techniques have significantly improved our understanding of biological phenomena and our capacity to model them. Despite combined capture of data modalities showing similar progress,…

Molecular Networks · Quantitative Biology 2025-03-13 Marcello Barylli , Joyaditya Saha , Tineke E. Buffart , Jan Koster , Kristiaan J. Lenos , Louis Vermeulen , Vivek M. Sheraton

We study the problem of cooperative localization of a large network of nodes in integer-coordinated unit disk graphs, a simplified but useful version of general random graph. Exploiting the property that the radius $r$ sets clear cut on the…

Distributed, Parallel, and Cluster Computing · Computer Science 2011-08-05 Phisan Kaewprapha , Jing Li , Nattakan Puttarak

Data copy is a widely-used memory operation in many programs and operating system services. In conventional computers, data copy is often carried out by two separate read and write transactions that pass data back and forth between the DRAM…

For the study of citation networks, a challenging problem is modeling the high clustering. Existing studies indicate that the promising way to model the high clustering is a copying strategy, i.e., a paper copies the references of its…

Physics and Society · Physics 2015-03-19 Fu-Xin Ren , Xue-Qi Cheng , Hua-Wei Shen

In this technical note, we present a new theoretical result for resource optimization with non-orthogonal multiple access (NOMA). For multi-cell scenarios, a so-called load-coupling model has been proposed to characterize the presence of…

Information Theory · Computer Science 2020-09-22 Lei You , Di Yuan

The digital transformation has been underway, creating digital shadows of (almost) all physical entities and moving them to the Internet. The era of Internet of Everything has therefore started to come into play, giving rise to…

Networking and Internet Architecture · Computer Science 2021-09-28 Hai Dao

In this paper, we study a generalization of the classical minimum cut prob- lem, called Connectivity Preserving Minimum Cut (CPMC) problem, which seeks a minimum cut to separate a pair (or pairs) of source and destination nodes and…

Data Structures and Algorithms · Computer Science 2013-09-27 Qi Duan , Jinhui Xu

A main distinguishing feature of a wireless network compared with a wired network is its broadcast nature, in which the signal transmitted by a node may reach several other nodes, and a node may receive signals from several other nodes…

Information Theory · Computer Science 2007-07-13 Zhang Shengli , Soung-Chang Liew , Patrick P. K. Lam