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The dynamics of particles interacting by key-lock binding of attached biomolecules are studied theoretically. Examples of such systems include DNA-functionalized colloids as well as nanoparticles grafted with antibodies to cell membrane…

Soft Condensed Matter · Physics 2007-05-23 Nicholas A. Licata , Alexei V. Tkachenko

Using Brownian dynamics simulations, we investigate the dynamics of colloids confined in two-dimensional narrow channels driven by a non-uniform force F(y). We considered linear-gradient, parabolic and delta-like driving-force profiles.…

Soft Condensed Matter · Physics 2009-11-05 D. V. Tkachenko , V. R. Misko , F. M. Peeters

Periodically driven dynamics of a particle moving in the field Coulomb plus confining potential is treated for one and three dimensional cases. Critical value of the external field strength at which chaotization will occur is evaluated…

Mathematical Physics · Physics 2011-08-31 D. U. Matrasulov , P. K. Khabibullaev , F. C. Khanna , D. M. Otajanov

We study colloidal particle dynamics of a model glass system using confocal and fluorescence microscopy as the sample evolves from a hard-sphere glass to a liquid with attractive interparticle interactions. The transition from hard-sphere…

Soft Condensed Matter · Physics 2015-05-13 Andrzej Latka , Yilong Han , Ahmed M. Alsayed , Andrew B. Schofield , A. G. Yodh , Piotr Habdas

We study dynamics of a probe molecule, driven by an external constant force in a liquid monolayer on top of solid surface. In terms of a microscopic, mean-field-type approach, we calculate the terminal velocity of the probe molecule. This…

Soft Condensed Matter · Physics 2015-06-25 J. De Coninck , G. Oshanin , M. Moreau

We investigate the motion of a colloidal particle driven out of equilibrium by an external torque. We use the molecular dynamics simulation that is alternative to the numerical integration approach based on the Langevin equation and is…

Statistical Mechanics · Physics 2017-03-08 Donghwan Yoo , Youngkyun Jung , Chulan Kwon

We numerically examine the dynamics of a probe particle driven at a constant force through an assembly of particles with competing long-range repulsion and short-range attraction that forms a bubble or stripe state. In the bubble regime, we…

Soft Condensed Matter · Physics 2025-05-27 C. Reichhardt , C. J. O. Reichhardt

The trajectories of colloidal particles driven through a periodic potential energy landscape can become kinetically locked in to directions dictated by the landscape's symmetries. When the landscape is realized with forces exerted by a…

Soft Condensed Matter · Physics 2015-05-14 Ke Xiao , David G. Grier

In this study, we examine the dynamics of a one-dimensional Frenkel-Kontorova chain consisting of nanosize clusters (the ''particles'') and photochromic molecules (the ''bonds''), and being subjected to a periodic substrate potential.…

Materials Science · Physics 2009-11-07 Bambi Hu , Jian-Yang Zhu

The collective dynamics of externally driven $N_{\rm p}$-colloidal systems ($1\le N_{\rm p}\le 4$) in a confined viscous fluid have been investigated using three-dimensional direct numerical simulations with fully resolved hydrodynamics.…

Soft Condensed Matter · Physics 2018-04-04 Norihiro Oyama , Kosuke Teshigawara , John Jairo Molina , Ryoichi Yamamoto , Takashi Taniguchi

The individual motion of a colloidal particle is described by an overdamped Langevin equation. When rotational degrees of freedom are relevant, these are described by a corresponding Langevin process. Our purpose is to show that the…

The effect of interactions on dynamics of coupled motor proteins is investigated theoretically. A simple stochastic discrete model, that allows to calculate explicitly the dynamic properties of the system, is developed. It is shown that…

Soft Condensed Matter · Physics 2009-11-11 Evgeny B. Stukalin , Anatoly B. Kolomeisky

Active and diffusive motion in Brownian particles are regularly observed in fluidic environments, albeit at different time scales. Here, we experimentally study the dynamics of highly asymmetric microclusters trapped in air employing…

The dynamics of individual colloidal particles in random potential energy landscapes were investigated experimentally and by Monte Carlo simulations. The value of the potential at each point in the two-dimensional energy landscape follows a…

We study a model colloidal liquid crystal consisting of hard spherocylinders under the influence of an external aligning potential by Langevin dynamics simulation. The external field that rotates in a plane acts on the orientation of the…

Soft Condensed Matter · Physics 2014-09-25 Ellen Fischermeier , Matthieu Marechal , Klaus Mecke

We investigate the dynamics of a charged particle confined to move on a toroidal helix while being driven by an external time-dependent electric field. The underlying phase space is analyzed for linearly and circularly polarized fields. For…

Chaotic Dynamics · Physics 2021-06-02 Ansgar Siemens , Peter Schmelcher

We study a two-dimensional model of an active isotropic colloid whose propulsion is linked to the interactions between solute particles of the bath. The colloid catalyzes a chemical reaction in its vicinity, that yields a local phase…

Soft Condensed Matter · Physics 2022-12-07 Jeanne Decayeux , Marie Jardat , Pierre Illien , Vincent Dahirel

The purpose of this work is to use active particles to study the effect of facilitation on supercooled liquids. To this end we investigate the behavior of a model supercooled liquid doped with intermittently active and intermittently slowed…

Soft Condensed Matter · Physics 2023-08-11 Victor Teboul

This preliminary study presents a simple modulation scheme to dynamically create time-averaged optical potentials to trap colloidal particles using acousto-optical modulation. The method provides access to control experimentally relevant…

Soft Condensed Matter · Physics 2022-04-21 Thalyta Tavares Martins , Sérgio Ricardo Muniz

We use Stokesian Dynamics simulations to study the microscopic motion of particles suspended in fluids passing through porous media. We construct model porous media with fixed spherical particles, and allow mobile ones to move through this…

Disordered Systems and Neural Networks · Physics 2009-10-31 Jysoo Lee , Joel Koplik