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We study the phase behavior of polar Active Brownian Particles moving in two-spatial dimensions and interacting through volume exclusion and velocity alignment. We combine particle-based simulations of the microscopic model with a simple…

Soft Condensed Matter · Physics 2018-12-26 Elena Sese-Sansa , Ignacio Pagonabarraga , Demian Levis

Active matter systems are able to exhibit emergent non-equilibrium states due to activity-induced effective interactions between the active particles. Here we study the aggregation and dynamical behavior of active rotating particles,…

Soft Condensed Matter · Physics 2017-01-25 Juan L. Aragones , Joshua P. Steimel , Alfredo Alexander-Katz

We analyze the isotropic compaction of assemblies composed of soft pentagons interacting through classical Coulomb friction via numerical simulations. The effect of the initial particle shape is discussed by comparing packings of pentagons…

Soft Condensed Matter · Physics 2021-06-16 Manuel Cárdenas-Barrantes , David Cantor , Jonathan Barés , Mathieu Renouf , Emilien Azéma

Electrophoretic deposition is a method of choice for generating coatings thanks to its ease of implementation and its ability to produce coatings of relatively large thicknesses in a single step process. While this process also benefits…

Materials Science · Physics 2026-05-01 Rémi Martin , Sandrine Duluard , Céline Merlet

We use a combination of unsupervised clustering and sparsity-promoting inference algorithms to learn locally dominant force balances that explain macroscopic pattern formation in self-organized active particle systems. The self-organized…

Soft Condensed Matter · Physics 2023-07-28 Dominik Sturm , Suryanarayana Maddu , Ivo F. Sbalzarini

The use of colloidal supported lipid bilayers (CSLBs) has recently been extended to create colloidal joints, that - in analogy to their macroscopic counterparts - can flexibly connect colloidal particles. These novel elements enable the…

Soft Condensed Matter · Physics 2018-12-20 Melissa Rinaldin , Ruben W. Verweij , Indrani Chakraborty , Daniela J. Kraft

We propose a new strategy for robust high-quality self-assembly of non-trivial periodic structures out of patchy particles, and investigate it with Brownian Dynamics (BD) simulations. Its first element is the use of specific patch-patch and…

Soft Condensed Matter · Physics 2017-08-09 Niladri Patra , Alexei V. Tkachenko

Extreme deformation of soft matter is central to our understanding of the effects of shock, fracture, and phase change in a variety of systems. Yet, despite, the increasing interest in this area, far-from-equilibrium behaviours of soft…

Soft Condensed Matter · Physics 2020-07-07 Axel Huerre , Marco De Corato , Valeria Garbin

We present a generic computational framework for the simulation of viral capsid assembly which is quantitative and specific. Starting from PDB files containing atomic coordinates, the algorithm builds a coarse grained description of protein…

Quantitative Methods · Quantitative Biology 2009-11-13 Martin Hemberg , Sophia N. Yaliraki , Mauricio Barahona

We study mixtures of self-propelled and passive rod-like particles in two dimensions using Brownian dynamics simulations. The simulations demonstrate that the two species spontaneously segregate to generate a rich array of dynamical domain…

Soft Condensed Matter · Physics 2015-03-13 Samuel R. McCandlish , Aparna Baskaran , Michael F. Hagan

We study the impact of an external alignment field on the structure formation and polarization behavior of low-density dipolar active particles in three dimensions. Performing extensive Brownian dynamics simulations, we characterize the…

Soft Condensed Matter · Physics 2025-10-30 Baptiste Parage , Sara Jabbari-Farouji

We report molecular dynamics simulations of a gel-forming mixture of ellipsoidal patchy particles with different functionality. We show that in this model, which disfavors the formation of bond-loops, elapsed time during irreversible…

Disordered Systems and Neural Networks · Physics 2009-03-09 Silvia Corezzi , Cristiano De Michele , Emanuela Zaccarelli , Piero Tartaglia , Francesco Sciortino

At low temperatures, colloidal particles with short-range attractive and long-range repulsive interactions can form various periodic microphases in bulk.In this paper, we investigate the self-assembly behaviour of colloids with competing…

Soft Condensed Matter · Physics 2023-12-12 Ningyi Li , Junhong Li , Lijingting Qing , Shicheng Ma , Yao Li , Baohui Li

Non-reciprocal (NR) effective interactions violating Newton's third law occur in many biological systems, but can also be engineered in synthetic, colloidal systems. Recent research has shown that such NR interactions can have tremendous…

Soft Condensed Matter · Physics 2024-12-12 Salman Fariz Navas , Sabine H. L. Klapp

Self-assembled linear structures like giant cylindrical micelles or discotic molecules in solution stacked in flexible columns are systems reminiscent of polydisperse polymer solutions.These supramolecular polymers have an equilibrium…

Soft Condensed Matter · Physics 2015-06-25 C-C Huang , H. Xu , F. Crevel , J. Wittmer , J. -P. Ryckaert

Colloids that interact via a short-range attraction serve as the primary building blocks for a broad range of self-assembled materials. However, one of the well-known drawbacks to this strategy is that these building blocks rapidly and…

Soft Condensed Matter · Physics 2020-09-16 S. A. Mallory , M. L. Bowers , A. Cacciuto

Preliminary results are presented for the kinetics of phase separation in three distinct models of protein aggregation. The first is a model of the formation of spherical microcrystals of insulin via an initial formation of fractal clusters…

Biological Physics · Physics 2010-05-10 J. D. Gunton , Wei Li , Ya Liu , Toni Perez , S. J. Khan , A. Chakrabarti

We consider the self-assembly of composite structures from a group of nanocomponents, each consisting of particles within an $N$-atom system. Self-assembly pathways and rates for nanocomposites are derived via a multiscale analysis of the…

Biological Physics · Physics 2014-01-06 Stephen Pankavich , Peter Ortoleva

We study the assembly into a gel network of colloidal particles, via effective interactions that yield local rigidity and make dilute network structures mechanically stable. The self-assembly process can be described by a Flory-Huggins…

Soft Condensed Matter · Physics 2014-06-18 Jader Colombo , Emanuela Del Gado

Ordered, collective motions commonly arise spontaneously in systems of many interacting, active units, ranging from cellular tissues and bacterial colonies to self-propelled colloids and animal flocks. Active phases are especially rich when…

Soft Condensed Matter · Physics 2024-07-15 Madhuvanthi Guruprasad Athani , Daniel A. Beller
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