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Nanopore sequencers are emerging as promising new platforms for high-throughput sequencing. As with other technologies, sequencer errors pose a major challenge for their effective use. In this paper, we present a novel information theoretic…

Information Theory · Computer Science 2016-01-12 Jarek Duda , Wojciech Szpankowski , Ananth Grama

Given a sequence of integers, we want to find a longest increasing subsequence of the sequence. It is known that this problem can be solved in $O(n \log n)$ time and space. Our goal in this paper is to reduce the space consumption while…

Data Structures and Algorithms · Computer Science 2017-12-27 Masashi Kiyomi , Hirotaka Ono , Yota Otachi , Pascal Schweitzer , Jun Tarui

We describe algorithms for finding the regression of t, a sequence of values, to the closest sequence s by mean squared error, so that s is always increasing (isotonicity) and so the values of two consecutive points do not increase by too…

Data Structures and Algorithms · Computer Science 2009-12-31 Pankaj K. Agarwal , Jeff M. Phillips , Bardia Sadri

For positive integers $s$, $t$, $m$ and $n$, the Zarankiewicz number $Z_{s,t}(m,n)$ is defined to be the maximum number of edges in a bipartite graph with parts of sizes $m$ and $n$ that has no complete biparitite subgraph containing $s$…

Combinatorics · Mathematics 2024-04-11 Guangzhou Chen , Daniel Horsley , Adam Mammoliti

We study the shape of the Young diagram \lambda associated via the Robinson-Schensted-Knuth algorithm to a random permutation in S_n such that the length of the longest decreasing subsequence is not bigger than a fixed number d; in other…

Combinatorics · Mathematics 2007-05-23 Piotr Sniady

Tusn\'ady's problem asks to bound the discrepancy of points and axis-parallel boxes in $\mathbb{R}^d$. Algorithmic bounds on Tusn\'ady's problem use a canonical decomposition of Matou\v{s}ek for the system of points and axis-parallel boxes,…

Computational Geometry · Computer Science 2022-02-11 Kunal Dutta

The problem is related to all-or-nothing transforms (AONT) suggested by Rivest as a preprocessing for encrypting data with a block cipher. Since then there have been various applications of AONTs in cryptography and security. D'Arco,…

Information Theory · Computer Science 2016-01-12 Yiwei Zhang , Tao Zhang , Xin Wang , Gennian Ge

The longest common substring problem consists in finding a longest string that appears as a (contiguous) substring of two input strings. We consider the dynamic variant of this problem, in which we are to maintain two dynamic strings $S$…

Data Structures and Algorithms · Computer Science 2026-04-09 Panagiotis Charalampopoulos , Paweł Gawrychowski , Karol Pokorski

We present a simple randomized scheme for triangulating a set $P$ of $n$ points in the plane, and construct a kinetic data structure which maintains the triangulation as the points of $P$ move continuously along piecewise algebraic…

Computational Geometry · Computer Science 2010-05-07 Haim Kaplan , Natan Rubin , Micha Sharir

Permutation patterns and pattern avoidance have been intensively studied in combinatorics and computer science, going back at least to the seminal work of Knuth on stack-sorting (1968). Perhaps the most natural algorithmic question in this…

Data Structures and Algorithms · Computer Science 2019-08-14 Benjamin Aram Berendsohn , László Kozma , Dániel Marx

We study the space requirements of a sorting algorithm where only items that at the end will be adjacent are kept together. This is equivalent to the following combinatorial problem: Consider a string of fixed length n that starts as a…

Probability · Mathematics 2007-05-23 Svante Janson

We introduce a new variant of the $k$-deck problem, which in its traditional formulation asks for determining the smallest $k$ that allows one to reconstruct any binary sequence of length $n$ from the multiset of its $k$-length…

Information Theory · Computer Science 2017-01-30 Ryan Gabrys , Olgica Milenkovic

In the semialgebraic range searching problem, we are to preprocess $n$ points in $\mathbb{R}^d$ s.t. for any query range from a family of constant complexity semialgebraic sets, all the points intersecting the range can be reported or…

Computational Geometry · Computer Science 2021-05-18 Peyman Afshani , Pingan Cheng

Let $G=C_n\oplus C_{mn}$ with $n\geq 2$ and $m\geq 1$, and let $k\in [0,n-1]$. It is known that any sequence of $mn+n-1+k$ terms from $G$ must contain a nontrivial zero-sum of length at most $mn+n-1-k$. The associated inverse question is to…

Number Theory · Mathematics 2021-09-22 David J. Grynkiewicz , Chao Liu

The sequence starts with a(1) = 1; to extend it one writes the sequence so far as XY^k, where X and Y are strings of integers, Y is nonempty and k is as large as possible: then the next term is k. The sequence begins 1, 1, 2, 1, 1, 2, 2, 2,…

The dynamic matrix inverse problem is to maintain the inverse of a matrix undergoing element and column updates. It is the main subroutine behind the best algorithms for many dynamic problems whose complexity is not yet well-understood,…

Data Structures and Algorithms · Computer Science 2019-05-14 Jan van den Brand , Danupon Nanongkai , Thatchaphol Saranurak

We consider the canonical generalization of the well-studied Longest Increasing Subsequence problem to multiple sequences, called $k$-LCIS: Given $k$ integer sequences $X_1,\dots,X_k$ of length at most $n$, the task is to determine the…

Computational Complexity · Computer Science 2020-04-10 Lech Duraj , Marvin Künnemann , Adam Polak

Keszegh (2009) proved that the extremal function $ex(n, P)$ of any forbidden light $2$-dimensional 0-1 matrix $P$ is at most quasilinear in $n$, using a reduction to generalized Davenport-Schinzel sequences. We extend this result to…

Combinatorics · Mathematics 2018-05-16 Jesse Geneson

We study the Schwinger mechanism in the presence of an additional uniformly oriented, weak super Gaussian of integer order $4N+2$. Using the worldline approach, we determine the relevant critical points to compute the leading order…

Quantum Physics · Physics 2019-11-05 Ibrahim Akal

We study the broadcast problem on dynamic networks with $n$ processes. The processes communicate in synchronous rounds along an arbitrary rooted tree. The sequence of trees is given by an adversary whose goal is to maximize the number of…

Distributed, Parallel, and Cluster Computing · Computer Science 2023-01-31 Antoine El-Hayek , Monika Henzinger , Stefan Schmid