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Although it has been evidenced that DNA computing is able to solve the graph coloring problem in a polynomial time complexity, but the exponential solution space is still a restrictive factor in applying this technique for solving really…

Computational Complexity · Computer Science 2013-04-15 Ramin Maazallahi , Aliakbar Niknafs

In this paper, we consider an algorithm for solving the minimum k supplier problem using the Adleman Lipton model. The procedure works in polynomial steps for the minimum k supplier problem of an undirected graph with n vertices, which is…

Data Structures and Algorithms · Computer Science 2018-02-02 Saeid Safaei , Vahid Safaei , Elizabeth D. Trippe , Karen Aguar , Hamid R. Arabnia

We study the maximum $k$-colorable subgraph (M$k$CS) problem, which consists in finding a largest $k$-colorable induced subgraph in a given graph. We consider a Semidefinite Programming (SDP) relaxation for the M$k$CS problem and regard its…

Optimization and Control · Mathematics 2026-05-05 Mathijs Barkel , Renata Sotirov

DNA computing, a nontraditional computing mechanism, provides a feasible and effective method for solving NP-hard problems because of the vast parallelism and high-density storage of DNA molecules. Although DNA computing has been exploited…

Molecular Networks · Quantitative Biology 2022-11-17 Enqiang Zhu , Xianhang Luo , Chanjuan Liu , Xiaolong Shi , Jin Xu

We study the densest subgraph problem and its NP-hard densest at-most-$k$ subgraph variant through the lens of learning-augmented algorithms. We show that, given a reasonably accurate predictor that estimates whether a node belongs to the…

Data Structures and Algorithms · Computer Science 2026-04-16 Thai Bui , Luan Nguyen , Hoa T. Vu

The GRAPH MOTIF problem asks whether a given multiset of colors appears on a connected subgraph of a vertex-colored graph. The fastest known parameterized algorithm for this problem is based on a reduction to the $k$-Multilinear Detection…

Data Structures and Algorithms · Computer Science 2012-08-24 Ioannis Koutis

We study the maximization version of the fundamental graph coloring problem. Here the goal is to color the vertices of a k-colorable graph with k colors so that a maximum fraction of edges are properly colored (i.e. their endpoints receive…

Computational Complexity · Computer Science 2015-05-14 Venkatesan Guruswami , Ali Kemal Sinop

${ NP}$-complete problem "Hamiltonian cycle"\ for graph $G=(V,E)$ is extended to the "Hamiltonian Complement of the Graph"\ problem of finding the minimal cardinality set $H$ containing additional edges so that graph $G=(V,E\cup H)$ is…

Computational Complexity · Computer Science 2018-08-27 Anatoly Panyukov

The problem of assembling DNA fragments starting from imperfect strings given by a sequencer, classified as NP hard when trying to get perfect answers, has a huge importance in several fields, because of its relation with the possibility of…

Data Structures and Algorithms · Computer Science 2017-05-26 Juan Manuel Ciro Restrepo , Andrés Felipe Zapata Palacio , Mauricio Toro

The graph coloring problem (GCP) is one of the most studied NP-HARD problems in computer science. Given a graph , the task is to assign a color to all vertices such that no vertices sharing an edge receive the same color and that the number…

Neural and Evolutionary Computing · Computer Science 2021-11-19 Robiul Islam , Arup Kumar Pramanik

Given an edge-colored graph, the Maximum Rainbow Matching problem asks for a maximum-cardinality matching of the graph that contains at most one edge from each color. We provide the following complexity dichotomy for this problem based on…

Discrete Mathematics · Computer Science 2026-04-24 Felix Hommelsheim , Pia Jehmlich , Moritz Mühlenthaler

Semidefinite programs (SDPs) can be solved in polynomial time by interior point methods. However, when the dimension of the problem gets large, interior point methods become impractical in terms of both computational time and memory…

Optimization and Control · Mathematics 2023-11-27 Federico Battista , Marianna De Santis

In this paper, we consider the maximum $k$-edge-colorable subgraph problem. In this problem we are given a graph $G$ and a positive integer $k$, the goal is to take $k$ matchings of $G$ such that their union contains maximum number of…

Combinatorics · Mathematics 2025-10-15 Vahan Mkrtchyan

Many practical problems in almost all scientific and technological disciplines have been classified as computationally hard (NP-hard or even NP-complete). In life sciences, combinatorial optimization problems frequently arise in molecular…

Data Structures and Algorithms · Computer Science 2015-03-19 H. Jose Antonio Martin

A Dynamic Programming based polynomial worst case time and space algorithm is described for computing Hamiltonian Path of a directed graph. Complexity constructive proofs along with a tested C++ implementation are provided as well. The…

Data Structures and Algorithms · Computer Science 2013-01-16 Dmitriy Nuriyev

In the Coloured Clustering problem, we wish to colour vertices of an edge coloured graph to produce as many stable edges as possible, i.e., edges with the same colour as their ends. In this paper, we reveal that the problem is in fact a…

Data Structures and Algorithms · Computer Science 2018-07-30 Leizhen CAI , On Yin LEUNG

Deep neural networks have been applied to a wide range of problems across different application domains with great success. Recently, research into combinatorial optimization problems in particular has generated much interest in the machine…

Machine Learning · Computer Science 2021-08-05 Jason Van Hulse , Joshua S. Friedman

We provide a simple algorithm for constructing Hamiltonian graph cycles (visiting every vertex exactly once) on a set of arbitrarily large finite subgraphs of aperiodic two-dimensional Ammann-Beenker (AB) tilings. Using this result, and the…

Statistical Mechanics · Physics 2024-07-11 Shobhna Singh , Jerome Lloyd , Felix Flicker

We present randomized algorithms for some well-studied, hard combinatorial problems: the k-path problem, the p-packing of q-sets problem, and the q-dimensional p-matching problem. Our algorithms solve these problems with high probability in…

Data Structures and Algorithms · Computer Science 2010-07-08 Andreas Björklund , Thore Husfeldt , Petteri Kaski , Mikko Koivisto

Given a graph $G$ that is modified by a sequence of edge insertions and deletions, we study the Maximum $k$-Edge Coloring problem Having access to $k$ colors, how can we color as many edges of $G$ as possible such that no two adjacent edges…

Data Structures and Algorithms · Computer Science 2025-04-11 Antoine El-Hayek , Kathrin Hanauer , Monika Henzinger
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