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Understanding how brain functions has been an intriguing topic for years. With the recent progress on collecting massive data and developing advanced technology, people have become interested in addressing the challenge of decoding brain…

Neurons and Cognition · Quantitative Biology 2016-12-01 Jingkang Yang , Haohan Wang , Jun Zhu , Eric P. Xing

Neural activity patterns related to behavior occur at many scales in time and space from the atomic and molecular to the whole brain. Here we explore the feasibility of interpreting neurophysiological data in the context of many-body…

Other Quantitative Biology · Quantitative Biology 2009-11-11 Walter J. Freeman , Giuseppe Vitiello

We investigate nonlinear state-space models without a closed-form transition density, and propose reformulating such models over their latent noise variables rather than their latent state variables. In doing so the tractable noise density…

Computation · Statistics 2013-12-11 Lawrence M. Murray , Emlyn M. Jones , John Parslow

We introduce a foundational model for brain dynamics that utilizes stochastic optimal control (SOC) and amortized inference. Our method features a continuous-discrete state space model (SSM) that can robustly handle the intricate and noisy…

Machine Learning · Computer Science 2025-02-10 Joonhyeong Park , Byoungwoo Park , Chang-Bae Bang , Jungwon Choi , Hyungjin Chung , Byung-Hoon Kim , Juho Lee

A new model for time series with a specific oscillation pattern is proposed. The model consists of a hidden phase process controlling the speed of polling and a nonparametric curve characterizing the pattern, leading together to a…

Statistics Theory · Mathematics 2016-08-15 Rainer Dahlhaus , Thierry Dumont , Sylvain Le Corff , Jan C. Neddermeyer

State space models (SSMs) have shown remarkable empirical performance on many long sequence modeling tasks, but a theoretical understanding of these models is still lacking. In this work, we study the learning dynamics of linear SSMs to…

Machine Learning · Computer Science 2024-07-11 Jakub Smékal , Jimmy T. H. Smith , Michael Kleinman , Dan Biderman , Scott W. Linderman

In this work, we introduce S4M, a new efficient speech separation framework based on neural state-space models (SSM). Motivated by linear time-invariant systems for sequence modeling, our SSM-based approach can efficiently model input…

Sound · Computer Science 2023-05-29 Chen Chen , Chao-Han Huck Yang , Kai Li , Yuchen Hu , Pin-Jui Ku , Eng Siong Chng

We develop a general framework for state estimation in systems modeled with noise-polluted continuous time dynamics and discrete time noisy measurements. Our approach is based on maximum likelihood estimation and employs the calculus of…

Optimization and Control · Mathematics 2026-01-16 Griffin M. Kearney , Makan Fardad

Echo state networks (ESNs) are a powerful form of reservoir computing that only require training of linear output weights whilst the internal reservoir is formed of fixed randomly connected neurons. With a correctly scaled connectivity…

Machine Learning · Computer Science 2021-08-03 Luca Manneschi , Matthew O. A. Ellis , Guido Gigante , Andrew C. Lin , Paolo Del Giudice , Eleni Vasilaki

Kalman Filter requires the true parameters of the model and solves optimal state estimation recursively. Expectation Maximization (EM) algorithm is applicable for estimating the parameters of the model that are not available before Kalman…

Machine Learning · Computer Science 2021-05-26 Zhuangwei Shi

Approximate message passing (AMP) type algorithms have been widely used in the signal reconstruction of certain large random linear systems. A key feature of the AMP-type algorithms is that their dynamics can be correctly described by state…

Information Theory · Computer Science 2023-07-03 Lei Liu , Shunqi Huang , YuZhi Yang , Zhaoyang Zhang , Brian M. Kurkoski

We develop a semi-parametric state-space model for time-series data with latent regime transitions. Classical Markov-switching models use fixed parametric transition functions, such as logistic or probit links, which restrict flexibility…

Machine Learning · Statistics 2026-04-08 Prakul Sunil Hiremath

Neural recordings are nonstationary time series, i.e. their properties typically change over time. Identifying specific changes, e.g. those induced by a learning task, can shed light on the underlying neural processes. However, such changes…

Quantitative Methods · Quantitative Biology 2013-01-28 Duncan A. J. Blythe , Frank C. Meinecke , Paul von Buenau , Klaus-Robert Mueller

In many areas of systems biology, including virology, pharmacokinetics, and population biology, dynamical systems are commonly used to describe biological processes. These systems can be characterized by estimating their parameters from…

Machine Learning · Statistics 2025-11-11 Tuan Minh Ha , Binh Thanh Nguyen , Lam Si Tung Ho

Generating diverse responses is crucial for test-time scaling of large language models (LLMs), yet standard stochastic sampling mostly yields surface-level lexical variation, limiting semantic exploration. In this paper, we propose…

Computation and Language · Computer Science 2026-04-29 Yuanhao Zeng , Ao Lu , Lufei Li , Zheng Zhang , Yexin Li , Kan Ren

Background: The complex scaling method (CSM) has been successfully used to describe many-body resonances as eigenvalues of the complex-scaled Hamiltonian in an appropriate $L^2$ basis representation. Its scope has subsequently been extended…

Nuclear Theory · Physics 2026-04-03 Yuma Kikuchi , Kiyoshi Katō , Takayuki Myo

Short-time Fourier transform (STFT) is the most common window-based approach for analyzing the spectrotemporal dynamics of time series. To mitigate the effects of high variance on the spectral estimates due to finite-length, independent…

Applications · Statistics 2022-01-19 Andrew H. Song , Seong-Eun Kim , Emery N. Brown

Recently there has seen promising results on automatic stage scoring by extracting spatio-temporal features from electroencephalogram (EEG). Such methods entail laborious manual feature engineering and domain knowledge. In this study, we…

Signal Processing · Electrical Eng. & Systems 2022-04-08 Lingwei Zhu , Koki Odani , Ziwei Yang , Guang Shi , Yirong Kan , Zheng Chen , Renyuan Zhang

We investigate the state space reconstruction from multiple time series derived from continuous and discrete systems and propose a method for building embedding vectors progressively using information measure criteria regarding past,…

Chaotic Dynamics · Physics 2015-05-19 Ioannis Vlachos , Dimitris Kugiumtzis

Data-driven inference of the generative dynamics underlying a set of observed time series is of growing interest in machine learning and the natural sciences. In neuroscience, such methods promise to alleviate the need to handcraft models…

Machine Learning · Computer Science 2024-11-06 Eric Volkmann , Alena Brändle , Daniel Durstewitz , Georgia Koppe