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Gaussian processes are powerful models for probabilistic machine learning, but are limited in application by their $O(N^3)$ inference complexity. We propose a method for deriving parametric families of kernel functions with compact spatial…

Machine Learning · Computer Science 2020-06-09 Jarred Barber

Subgraph counting aims to count the occurrences of a subgraph template T in a given network G. The basic problem of computing structural properties such as counting triangles and other subgraphs has found applications in diverse domains.…

Distributed, Parallel, and Cluster Computing · Computer Science 2019-03-12 Langshi Chen , Jiayu Li , Ariful Azad , Lei Jiang , Madhav Marathe , Anil Vullikanti , Andrey Nikolaev , Egor Smirnov , Ruslan Israfilov , Judy Qiu

Suffix trees are an important data structure at the core of optimal solutions to many fundamental string problems, such as exact pattern matching, longest common substring, matching statistics, and longest repeated substring. Recent lines…

Data Structures and Algorithms · Computer Science 2022-08-31 Nicola Rizzo , Alexandru I. Tomescu , Alberto Policriti

\textsc{Edge Triangle Packing} and \textsc{Edge Triangle Covering} are dual problems extensively studied in the field of parameterized complexity. Given a graph $G$ and an integer $k$, \textsc{Edge Triangle Packing} seeks to determine…

Computational Complexity · Computer Science 2023-09-01 Zimo Sheng , Mingyu Xiao

Nowhere dense classes of graphs are very general classes of uniformly sparse graphs with several seemingly unrelated characterisations. From an algorithmic perspective, a characterisation of these classes in terms of uniform quasi-wideness,…

Discrete Mathematics · Computer Science 2018-09-06 Stephan Kreutzer , Roman Rabinovich , Sebastian Siebertz

We discuss the problem of extending data mining approaches to cases in which data points arise in the form of individual graphs. Being able to find the intrinsic low-dimensionality in ensembles of graphs can be useful in a variety of…

Data Analysis, Statistics and Probability · Physics 2013-06-18 Karthikeyan Rajendran , Ioannis G. Kevrekidis

A spanning subgraph of a graph $G$ is called a perfect star packing in $G$ if every component of the spanning subgraph is isomorphic to the star graph $K_{1,3}$. An efficient dominating set of graph $G$ is a vertex subset $D$ of $G$ such…

Combinatorics · Mathematics 2021-03-23 Ling-Juan Shi

Analysis of large-scale sequential data has been one of the most crucial tasks in areas such as bioinformatics, text, and audio mining. Existing string kernels, however, either (i) rely on local features of short substructures in the…

Machine Learning · Computer Science 2019-12-02 Lingfei Wu , Ian En-Hsu Yen , Siyu Huo , Liang Zhao , Kun Xu , Liang Ma , Shouling Ji , Charu Aggarwal

We consider the parameterized complexity of the problem of tracking shortest s-t paths in graphs, motivated by applications in security and wireless networks. Given an undirected and unweighted graph with a source s and a destination t,…

Data Structures and Algorithms · Computer Science 2020-08-19 Aritra Banik , Pratibha Choudhary , Venkatesh Raman , Saket Saurabh

A graph $G$ is called a \emph{block graph} if each maximal $2$-connected component of $G$ is a clique. In this paper we study the Block Graph Vertex Deletion from the perspective of fixed parameter tractable (FPT) and kernelization…

Data Structures and Algorithms · Computer Science 2015-10-29 Akanksha Agrawal , Sudeshna Kolay , Daniel Lokshtanov , Saket Saurabh

We propose Slim Graph: the first programming model and framework for practical lossy graph compression that facilitates high-performance approximate graph processing, storage, and analytics. Slim Graph enables the developer to express…

Data Structures and Algorithms · Computer Science 2021-08-04 Maciej Besta , Simon Weber , Lukas Gianinazzi , Robert Gerstenberger , Andrey Ivanov , Yishai Oltchik , Torsten Hoefler

Mining cohesive subgraphs in attributed graphs is an essential problem in the domain of graph data analysis. The integration of fairness considerations significantly fuels interest in models and algorithms for mining fairness-aware cohesive…

Databases · Computer Science 2023-12-08 Qi Zhang , Rong-Hua Li , Zifan Zheng , Hongchao Qin , Ye Yuan , Guoren Wang

Bidimensionality Theory was introduced by [E.D. Demaine, F.V. Fomin, M.Hajiaghayi, and D.M. Thilikos. Subexponential parameterized algorithms on graphs of bounded genus and H-minor-free graphs, J. ACM, 52 (2005), pp.866--893] as a tool to…

Data Structures and Algorithms · Computer Science 2020-09-02 Fedor V. Fomin , Daniel Lokshtanov , Saket Saurabh , Dimitrios M. Thilikos

We study Clustered Planarity with Linear Saturators, which is the problem of augmenting an $n$-vertex planar graph whose vertices are partitioned into independent sets (called clusters) with paths - one for each cluster - that connect all…

Data Structures and Algorithms · Computer Science 2024-10-01 Giordano Da Lozzo , Robert Ganian , Siddharth Gupta , Bojan Mohar , Sebastian Ordyniak , Meirav Zehavi

In Two-Sets Cut-Uncut, we are given an undirected graph $G=(V,E)$ and two terminal sets $S$ and $T$. The task is to find a minimum cut $C$ in $G$ (if there is any) separating $S$ from $T$ under the following ``uncut'' condition. In the…

Data Structures and Algorithms · Computer Science 2024-08-27 Matthias Bentert , Fedor V. Fomin , Fanny Hauser , Saket Saurabh

Finding dense subgraphs of a large graph is a standard problem in graph mining that has been studied extensively both for its theoretical richness and its many practical applications. In this paper we introduce a new family of dense…

Data Structures and Algorithms · Computer Science 2021-06-07 Nate Veldt , Austin R. Benson , Jon Kleinberg

We present a new approach for solving (minimum disagreement) correlation clustering that results in sublinear algorithms with highly efficient time and space complexity for this problem. In particular, we obtain the following algorithms for…

Data Structures and Algorithms · Computer Science 2021-09-30 Sepehr Assadi , Chen Wang

The irrelevant vertex technique provides a powerful tool for the design of parameterized algorithms for a wide variety of problems on graphs. A common characteristic of these problems, permitting the application of this technique on…

Data Structures and Algorithms · Computer Science 2026-05-01 Petr A. Golovach , Stavros G. Kolliopoulos , Giannos Stamoulis , Dimitrios M. Thilikos

In the analysis of large-scale network data, a fundamental operation is the comparison of observed phenomena to the predictions provided by null models: when we find an interesting structure in a family of real networks, it is important to…

Social and Information Networks · Computer Science 2021-02-26 Katherine Van Koevering , Austin R. Benson , Jon Kleinberg

We introduce a family of multilayer graph kernels and establish new links between graph convolutional neural networks and kernel methods. Our approach generalizes convolutional kernel networks to graph-structured data, by representing…

Machine Learning · Statistics 2020-06-30 Dexiong Chen , Laurent Jacob , Julien Mairal