Related papers: Explicit linear kernels for packing problems
The C-Planarity problem asks for a drawing of a $\textit{clustered graph}$, i.e., a graph whose vertices belong to properly nested clusters, in which each cluster is represented by a simple closed region with no edge-edge crossings, no…
The Treewidth-2 Vertex Deletion problem asks whether a set of at most $t$ vertices can be removed from a graph, such that the resulting graph has treewidth at most two. A graph has treewidth at most two if and only if it does not contain a…
The majority of popular graph kernels is based on the concept of Haussler's $\mathcal{R}$-convolution kernel and defines graph similarities in terms of mutual substructures. In this work, we enrich these similarity measures by considering…
We study the parameterized complexity of the connected version of the vertex cover problem, where the solution set has to induce a connected subgraph. Although this problem does not admit a polynomial kernel for general graphs (unless NP is…
We consider the Minimum Coverage Kernel problem: given a set $B$ of $d$-dimensional boxes, find a subset of $B$ of minimum size covering the same region as $B$. This problem is $\mathsf{NP}$-hard, but as for many $\mathsf{NP}$-hard problems…
Graph separation and partitioning are fundamental problems that have been extensively studied both in theory and practice. The \textsc{$p$-Size Separator} problem, closely related to the \textsc{Balanced Separator} problem, is to check…
Diffusion kernels over graphs have been widely utilized as effective tools in various applications due to their ability to accurately model the flow of information through nodes and edges. However, there is a notable gap in the literature…
Many graph problems were first shown to be fixed-parameter tractable using the results of Robertson and Seymour on graph minors. We show that the combination of finite, computable, obstruction sets and efficient order tests is not just one…
In an edge modification problem, we are asked to modify at most $k$ edges to a given graph to make the graph satisfy a certain property. Depending on the operations allowed, we have the completion problems and the edge deletion problems. A…
As hardware architectures are evolving in the push towards exascale, developing Computational Science and Engineering (CSE) applications depend on performance portable approaches for sustainable software development. This paper describes…
We consider the $\Pi$-free Deletion problem parameterized by the size of a vertex cover, for a range of graph properties $\Pi$. Given an input graph $G$, this problem asks whether there is a subset of at most $k$ vertices whose removal…
We present a unified framework to study graph kernels, special cases of which include the random walk graph kernel \citep{GaeFlaWro03,BorOngSchVisetal05}, marginalized graph kernel \citep{KasTsuIno03,KasTsuIno04,MahUedAkuPeretal04}, and…
Graph kernels are often used in bioinformatics and network applications to measure the similarity between graphs; therefore, they may be used to construct efficient graph classifiers. Many graph kernels have been developed thus far, but to…
Problems from metric graph theory like Metric Dimension, Geodetic Set, and Strong Metric Dimension have recently had a strong impact in parameterized complexity by being the first known problems in NP to admit double-exponential lower…
A hypergraph ${\cal F}$ is a set family defined on vertex set $V$. The dual of ${\cal F}$ is the set of minimal subsets $H$ of $V$ such that $F\cap H \ne \emptyset$ for any $F\in {\cal F}$. The computation of the dual is equivalent to many…
We propose a new graph-theoretic benchmark in this paper. The benchmark is developed to address shortcomings of an existing widely-used graph benchmark. We thoroughly studied a large number of traditional and contemporary graph algorithms…
The class of graph deletion problems has been extensively studied in theoretical computer science, particularly in the field of parameterized complexity. Recently, a new notion of graph deletion problems was introduced, called deletion to…
Most state-of-the-art graph kernels only take local graph properties into account, i.e., the kernel is computed with regard to properties of the neighborhood of vertices or other small substructures. On the other hand, kernels that do take…
Scaling up the sparse matrix-vector multiplication kernel on modern Graphics Processing Units (GPU) has been at the heart of numerous studies in both academia and industry. In this article we present a novel non-parametric, self-tunable,…
The independent set problem is NP-hard and particularly difficult to solve in large sparse graphs. In this work, we develop an advanced evolutionary algorithm, which incorporates kernelization techniques to compute large independent sets in…