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Human brain activity is often measured using the blood-oxygen-level dependent (BOLD) signals obtained through functional magnetic resonance imaging (fMRI). The strength of connectivity between brain regions is then measured as a Pearson…

Other Quantitative Biology · Quantitative Biology 2022-05-20 Moo K. Chung , Zijian Chen

The problem of neural coding is to understand how sequences of action potentials (spikes) are related to sensory stimuli, motor outputs, or (ultimately) thoughts and intentions. One clear question is whether the same coding rules are used…

When choosing between options, we must associate their values with the action needed to select them. We hypothesize that the brain solves this binding problem through neural population subspaces. To test this hypothesis, we examined…

Neurons and Cognition · Quantitative Biology 2023-09-15 W. Jeffrey Johnston , Justin M. Fine , Seng Bum Michael Yoo , R. Becket Ebitz , Benjamin Y. Hayden

Predictive coding has emerged as an influential normative model of neural computation, with numerous extensions and applications. As such, much effort has been put into mapping PC faithfully onto the cortex, but there are issues that remain…

Neurons and Cognition · Quantitative Biology 2023-03-07 Siavash Golkar , Tiberiu Tesileanu , Yanis Bahroun , Anirvan M. Sengupta , Dmitri B. Chklovskii

The behavior of many complex systems is determined by a core of densely interconnected units. While many methods are available to identify the core of a network when connections between nodes are all of the same type, a principled approach…

Neurons and Cognition · Quantitative Biology 2018-09-14 Federico Battiston , Jeremy Guillon , Mario Chavez , Vito Latora , Fabrizio De Vico Fallani

We formulate explicit predictions concerning the symmetry of optimal codes in compact metric spaces. This motivates the study of optimal codes in various spaces where these predictions can be tested.

Combinatorics · Mathematics 2025-12-25 Emily J. King , Dustin G. Mixon , Hans Parshall , Chris Wells

Linear Complementary Dual codes (LCD) are binary linear codes that meet their dual trivially. We construct LCD codes using orthogonal matrices, self-dual codes, combinatorial designs and Gray map from codes over the family of rings $R_k$.…

Information Theory · Computer Science 2015-06-08 Steven T. Dougherty , Jon-Lark Kim , Buket Ozkaya , Lin Sok , Patrick Solé

This article reports on simulations that show how, starting with a form of neural lattice structure, it is possible to reversibly generate many alternative isomers with a lower structural symmetry, which results from twisting two hexagons…

Other Quantitative Biology · Quantitative Biology 2016-11-09 Arturo Tozzi , James F. Peters , Ottorino Ori

Intersecting codes are linear codes where every two nonzero codewords have non-trivially intersecting support. In this article we expand on the theory of this family of codes, by showing that nondegenerate intersecting codes correspond to…

Combinatorics · Mathematics 2024-06-07 Martino Borello , Wolfgang Schmid , Martin Scotti

We show that training deep neural networks (DNNs) with absolute value activation and arbitrary input dimension can be formulated as equivalent convex Lasso problems with novel features expressed using geometric algebra. This formulation…

Machine Learning · Computer Science 2024-10-15 Emi Zeger , Mert Pilanci

Binary codes are constructed from incidence matrices of hypergraphs. A combinatroial description is given for the minimum distances of such codes via a combinatorial tool called ``eonv". This combinatorial approach provides a faster…

Information Theory · Computer Science 2022-10-14 Sudipta Mallik , Bahattin Yildiz

Recent advances in neuroimaging along with algorithmic innovations in statistical learning from network data offer a unique pathway to integrate brain structure and function, and thus facilitate revealing some of the brain's organizing…

Signal Processing · Electrical Eng. & Systems 2021-12-21 Yang Li , Gonzalo Mateos , Zhengwu Zhang

Biological visual systems learn from limited experience, unlike deep learning models that rely on millions of training images. What learning principles make this possible? We tested whether efficient coding, the idea that neural…

Computer Vision and Pattern Recognition · Computer Science 2026-05-20 Ananya Passi , Brian S. Robinson , Michael F. Bonner

The cortex is a very large network characterized by a complex connectivity including at least two scales: a microscopic scale at which the interconnections are non-specific and very dense, while macroscopic connectivity patterns connecting…

Neurons and Cognition · Quantitative Biology 2015-06-17 Jonathan Touboul

Neural implicit representations, which encode a surface as the level set of a neural network applied to spatial coordinates, have proven to be remarkably effective for optimizing, compressing, and generating 3D geometry. Although these…

Computer Vision and Pattern Recognition · Computer Science 2022-06-27 Nicholas Sharp , Alec Jacobson

Primary visual cortex (V1) is the first stage of cortical image processing, and a major effort in systems neuroscience is devoted to understanding how it encodes information about visual stimuli. Within V1, many neurons respond selectively…

Neurons and Cognition · Quantitative Biology 2017-06-21 William F. Kindel , Elijah D. Christensen , Joel Zylberberg

A quadratic approximation of neural network loss landscapes has been extensively used to study the optimization process of these networks. Though, it usually holds in a very small neighborhood of the minimum, it cannot explain many…

Machine Learning · Computer Science 2022-06-23 Chao Ma , Daniel Kunin , Lei Wu , Lexing Ying

Predictive coding is a message-passing framework initially developed to model information processing in the brain, and now also topic of research in machine learning due to some interesting properties. One of such properties is the natural…

Machine Learning · Computer Science 2022-12-12 Billy Byiringiro , Tommaso Salvatori , Thomas Lukasiewicz

Neural shape representation generally refers to representing 3D geometry using neural networks, e.g., computing a signed distance or occupancy value at a specific spatial position. In this paper we present a neural-network architecture…

Machine Learning · Computer Science 2024-08-22 Stefan Rhys Jeske , Jonathan Klein , Dominik L. Michels , Jan Bender

In this contribution, we demonstrate that Graph Neural Networks and Transformers can learn to reason about geometric constraints. We train them to predict spatial position of points in a discrete 2D grid from a set of constraints that…

Machine Learning · Computer Science 2026-03-03 Jan Hůla , David Mojžíšek , Jiří Janeček , David Herel , Mikoláš Janota