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Graph databases have been the subject of significant research and development. Problems such as modularity, centrality, alignment, and clustering have been formalized and solved in various application contexts. In this paper, we focus on…

Social and Information Networks · Computer Science 2019-08-09 Vikram Ravindra , Huda Nassar , David F. Gleich , Ananth Grama

Network alignment generalizes and unifies several approaches for forming a matching or alignment between the vertices of two graphs. We study a mathematical programming framework for network alignment problem and a sparse variation of it…

Optimization and Control · Mathematics 2011-11-03 Mohsen Bayati , David F. Gleich , Amin Saberi , Ying Wang

This paper initiates the study of online algorithms for the maximum weight $b$-matching problem, a generalization of maximum weight matching where each node has at most $b \geq 1$ adjacent matching edges. The problem is motivated by…

Networking and Internet Architecture · Computer Science 2021-03-16 Marcin Bienkowski , David Fuchssteiner , Jan Marcinkowski , Stefan Schmid

Biological network alignment identifies topologically and functionally conserved regions between networks of different species. It encompasses two algorithmic steps: node cost function (NCF), which measures similarities between nodes in…

Molecular Networks · Quantitative Biology 2014-07-21 Joseph Crawford , Yihan Sun , Tijana Milenković

We consider the Stochastic Matching problem, which is motivated by applications in kidney exchange and online dating. In this problem, we are given an undirected graph. Each edge is assigned a known, independent probability of existence and…

Data Structures and Algorithms · Computer Science 2020-10-19 Marek Adamczyk , Brian Brubach , Fabrizio Grandoni , Karthik A. Sankararaman , Aravind Srinivasan , Pan Xu

Aligning protein interaction networks (PPI) of two or more organisms consists of finding a mapping of the nodes (proteins) of the networks that captures important structural and functional associations (similarity). It is a well studied but…

Molecular Networks · Quantitative Biology 2020-10-12 Concettina Guerra , Pietro Hiram Guzzi

Sequence comparison and alignment has had an enormous impact on our understanding of evolution, biology, and disease. Comparison and alignment of biological networks will likely have a similar impact. Existing network alignments use…

Molecular Networks · Quantitative Biology 2009-10-08 Oleksii Kuchaiev , Tijana Milenkovic , Vesna Memisevic , Wayne Hayes , Natasa Przulj

Graph matching problem aims to identify node correspondence between two or more correlated graphs. Previous studies have primarily focused on models where only edge information is provided. However, in many social networks, not only the…

Information Theory · Computer Science 2024-07-18 Joonhyuk Yang , Hye Won Chung

Bipartite networks manifest as a stream of edges that represent transactions, e.g., purchases by retail customers. Many machine learning applications employ neighborhood-based measures to characterize the similarity among the nodes, such as…

Social and Information Networks · Computer Science 2018-05-09 Nesreen K. Ahmed , Nick Duffield , Liangzhen Xia

The graph alignment problem, which considers the optimal node correspondence across networks, has recently gained significant attention due to its wide applications. There are graph alignment methods suited for various network types, but we…

Social and Information Networks · Computer Science 2025-05-15 Ashley Wang , Peter Chin

We introduce a new distributed algorithm for aligning graphs or finding substructures within a given graph. It is based on the cavity method and is used to study the maximum-clique and the graph-alignment problems in random graphs. The…

Quantitative Methods · Quantitative Biology 2010-04-02 S. Bradde , A. Braunstein , H. Mahmoudi , F. Tria , M. Weigt , R. Zecchina

This thesis studies the graph alignment problem, the noisy version of the graph isomorphism problem, which aims to find a matching between the nodes of two graphs which preserves most of the edges. Focusing on the planted version where the…

Data Structures and Algorithms · Computer Science 2024-04-22 Luca Ganassali

Image matching is a key component of many tasks in computer vision and its main objective is to find correspondences between features extracted from different natural images. When images are represented as graphs, image matching boils down…

Computer Vision and Pattern Recognition · Computer Science 2022-05-31 Nancy Xu , Giannis Nikolentzos , Michalis Vazirgiannis , Henrik Boström

In bipartite matching problems, vertices on one side of a bipartite graph are paired with those on the other. In its online variant, one side of the graph is available offline, while the vertices on the other side arrive online. When a…

Data Structures and Algorithms · Computer Science 2018-11-14 John P. Dickerson , Karthik Abinav Sankararaman , Aravind Srinivasan , Pan Xu

Graph alignment aims at finding the vertex correspondence between two correlated graphs, a task that frequently occurs in graph mining applications such as social network analysis. Attributed graph alignment is a variant of graph alignment,…

Data Structures and Algorithms · Computer Science 2024-03-13 Ziao Wang , Ning Zhang , Weina Wang , Lele Wang

Many real-world problems can be formalized as predicting links in a partially observed network. Examples include Facebook friendship suggestions, consumer-product recommendations, and the identification of hidden interactions between actors…

Machine Learning · Computer Science 2020-02-05 Xi Chen , Bo Kang , Jefrey Lijffijt , Tijl De Bie

The graph alignment problem aims to identify the vertex correspondence between two correlated graphs. Most existing studies focus on the scenario in which the two graphs share the same vertex set. However, in many real-world applications,…

Information Theory · Computer Science 2026-01-13 Chun Hei Michael Shiu , Hei Victor Cheng , Lele Wang

Online Bayesian bipartite matching is a central problem in digital marketplaces and exchanges, including advertising, crowdsourcing, ridesharing, and kidney exchange. We introduce a graph neural network (GNN) approach that emulates the…

Machine Learning · Computer Science 2024-06-21 Alexandre Hayderi , Amin Saberi , Ellen Vitercik , Anders Wikum

We consider the problem of approximating a maximum weighted matching, when the edges of an underlying weighted graph $G(V,E)$ are revealed in a streaming fashion. We analyze a variant of the previously best-known…

Data Structures and Algorithms · Computer Science 2018-05-01 Elena Grigorescu , Morteza Monemizadeh , Samson Zhou

Network alignment aims at inferring a set of anchor links matching the shared entities between different information networks, which has become a prerequisite step for effective fusion of multiple information networks. In this paper, we…

Social and Information Networks · Computer Science 2020-07-07 Yuxiang Ren , Charu C. Aggarwal , Jiawei Zhang