Related papers: Geometric stability considerations of the ribosome…
The ribosome flow model (RFM) is a phenomenological model for the unidirectional flow of particles along a 1D chain of $n$ sites. The RFM has been extensively used to study the dynamics of ribosome flow along a single mRNA molecule during…
In this work we propose a novel method to ensure important entropy inequalities are satisfied semi-discretely when constructing reduced order models (ROMs) on nonlinear reduced manifolds. We are in particular interested in ROMs of systems…
The Ribosome Flow Model (RFM) describes the unidirectional movement of interacting particles along a one-dimensional chain of sites. As a site becomes fuller, the effective entry rate into this site decreases. The RFM has been used to model…
By identifying Hamiltonian flows with geodesic flows of suitably chosen Riemannian manifolds, it is possible to explain the origin of chaos in classical Newtonian dynamics and to quantify its strength. There are several possibilities to…
The ribosome flow model with input and output (RFMIO) is a deterministic dynamical system that has been used to study the flow of ribosomes during mRNA translation. The RFMIO and its variants encapsulate important properties that are…
A recently proposed renormalization group technique, based on the hierarchical structures present in theories with fluctuating geometry, is implemented in the model of branched polymers. The renormalization group equations can be solved…
We study holographic RG flows in a 3d supergravity model from the side of the dynamical system theory. The gravity equations of motion are reduced to an autonomous dynamical system. Then we find equilibrium points of the system and analyze…
In this paper the qualitative dynamical properties of so-called generalized ribosome flow models are studied. Ribosome flow models known from the literature are generalized by allowing an arbitrary directed network structure between the…
This paper is concerned with the global dynamics of a hybrid parabolic-hyperbolic model describing populations with distinct dispersal and sedentary stages. We first establish the global well-posedness of solutions, prove a comparison…
In this paper we analyze the stability of equilibrium manifolds of hyperbolic shallow water moment equations. Shallow water moment equations describe shallow flows for complex velocity profiles which vary in vertical direction and the…
The ribosome flow model (RFM) is a phenomenological model for the flow of particles along a 1D chain of $n$ sites. It has been extensively used to study ribosome flow along the mRNA molecule during translation. When the transition rates…
In this paper we introduce and study a new kind of hyperbolic geometric flows --dissipative hyperbolic geometric flow. This kind of flow is defined by a system of quasilinear wave equations with dissipative terms. Some interesting exact…
We consider four extended Ricci flow systems---that is, Ricci flow coupled with other geometric flows---and prove dynamical stability of certain classes of stationary solutions of these flows. The systems include Ricci flow coupled with…
We present a novel geometric approach for determining the unique structure of a Hamiltonian and establishing an instability criterion for quantum quadratic systems. Our geometric criterion provides insights into the underlying geometric…
The rimming flow of a viscoelastic thin film inside a rotating horizontal cylinder is studied theoretically. Attention is given to the onset of non-Newtonian free-surface instability in creeping flow. This non-inertial instability has been…
The ribosomal density along the coding region of the mRNA molecule affect various fundamental intracellular phenomena including: protein production rates, organismal fitness, ribosomal drop off, and co-translational protein folding. Thus,…
A novel reduced-order model (ROM) formulation for incompressible flows is presented with the key property that it exhibits non-linearly stability, independent of the mesh (of the full order model), the time step, the viscosity, and the…
This paper explores the evolution and monotonicity of geometric constants within the framework of extended Ricci flows, incorporating variable coupling parameters. Building on Hamiltons foundational Ricci flow and subsequent extensions by…
Complex systems with many degrees of freedom are typically intractable, but some of their behaviors may admit simpler effective descriptions. The question of when such effective descriptions are possible remains open. The paradigmatic…
We design strategies in nonlinear geometric analysis to temper the effects of adversarial learning for sufficiently smooth data of numerical method-type dynamics in encoder-decoder methods, variational and deterministic, through the use of…