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On surfaces with many motile cilia, beats of the individual cilia coordinate to form metachronal waves. We present a theoretical framework that connects the dynamics of an individual cilium to the collective dynamics of a ciliary carpet via…

Soft Condensed Matter · Physics 2021-03-12 Fanlong Meng , Rachel R. Bennett , Nariya Uchida , Ramin Golestanian

The dynamics of cellular aggregates is driven by the interplay of mechanochemical processes and cellular activity. Although deterministic models may capture mechanical features, local chemical fluctuations trigger random cell responses,…

Soft Condensed Matter · Physics 2024-01-17 Ana Carpio , Elena Cebrian

Trajectories from a pair of interacting zebrafish are used to test for the existence of anticipatory dynamics in natural systems. Anticipatory dynamics (AD) is unusual in that causal events are not necessarily ordered by their temporal…

Biological Physics · Physics 2022-01-03 Chun-Jen Chen , Chi-An Lin , Heng Hsu , José Jiun-Shian Wu , Yu-Ting Huang , C. K. Chan

We propose a novel model-selection method for dynamic networks. Our approach involves training a classifier on a large body of synthetic network data. The data is generated by simulating nine state-of-the-art random graph models for dynamic…

Social and Information Networks · Computer Science 2024-05-28 Lourens Touwen , Doina Bucur , Remco van der Hofstad , Alessandro Garavaglia , Nelly Litvak

Cell growth in size is a complex process coordinated by intrinsic and environmental signals. In a recent work [Tzur et al., Science, 2009, 325:167-171], size distributions in an exponentially growing population of mammalian cells were used…

Cell Behavior · Quantitative Biology 2015-06-16 Yucheng Hu , Tianqi Zhu

We report the generation of a dynamic labyrinthine pattern in an active alcohol film. A dynamic labyrinthine pattern is formed along the contact line of air/pentanol/aqueous three phases. The contact line shows a clear time-dependent change…

Fluid Dynamics · Physics 2015-06-11 Yong-Jun Chen , Yuko Nagamine , Kenichi Yoshikawa

Cell migration in vivo is often guided by chemical signals. Such chemotaxis, such as performed by immune cells migrating to a wound site, is complicated by the complex geometry inside living tissues. In this study, we extend our theoretical…

We report resonant features of novel controllable reflectarray which consists of meander-like graphene strips placed on a metal-backed dielectric substrate. The structure manifests two kinds of resonances appeared as sharp deeps of…

Optics · Physics 2015-07-15 Victor Dmitriev , Clerison Nascimento , Sergey L. Prosvirnin

We describe a neural attention model with a learnable retinal sampling lattice. The model is trained on a visual search task requiring the classification of an object embedded in a visual scene amidst background distractors using the…

Neural and Evolutionary Computing · Computer Science 2017-10-24 Brian Cheung , Eric Weiss , Bruno Olshausen

This study presents a dynamic Bayesian network framework that facilitates intuitive gradual edge changes. We use two conditional dynamics to model the edge addition and deletion, and edge selection separately. Unlike previous research that…

Methodology · Statistics 2025-05-08 Lupe S. H. Chan , Amanda M. Y. Chu , Mike K. P. So

The dynamics of cellular pattern formation is crucial for understanding embryonic development and tissue morphogenesis. Recent studies have shown that human dermal fibroblasts cultured on liquid crystal elastomers can exhibit an increase in…

Biological Physics · Physics 2023-08-25 Mengyang Gu , Xinyi Fang , Yimin Luo

We present a generic mechanism by which reproducing microorganisms, with a diffusivity that depends on the local population density, can form stable patterns. It is known that a decrease of swimming speed with density can promote separation…

Populations and Evolution · Quantitative Biology 2010-07-13 M. E. Cates , D. Marenduzzo , I. Pagonabarraga , J. Tailleur

Grid cells in the medial entorhinal cortex (MEC) of the mammalian brain exhibit a strikingly regular hexagonal firing field over space. These cells are learned after birth and are thought to support spatial navigation but also more abstract…

Neurons and Cognition · Quantitative Biology 2024-10-07 Mufeng Tang , Helen Barron , Rafal Bogacz

Understanding how microorganisms navigate in complex environments is a central question in active matter and biological physics. Phototaxis - the ability to use light as a navigation cue - is a widespread strategy in motile microalgae to…

Multicellular tissues are the building blocks of many biological systems and organs. These tissues are not static, but dynamically change over time. Even if the overall structure remains the same there is a turnover of cells within the…

Tissues and Organs · Quantitative Biology 2021-02-12 Domenic P. J. Germano , James M. Osborne

Collective behaviour in living systems is observed across many scales, from bacteria to insects, to fish shoals. Zebrafish have emerged as a model system amenable to laboratory study. Here we report a three-dimensional study of the…

Statistical Mechanics · Physics 2024-05-16 Yushi Yang , Francesco Turci , Erika Kague , Chrissy L. Hammond , John Russo , C. Patrick Royall

Understanding the rules underlying organismal development is a major unsolved problem in biology. Each cell in a developing organism responds to signals in its local environment by dividing, excreting, consuming, or reorganizing, yet how…

Cell Behavior · Quantitative Biology 2025-08-20 Ramya Deshpande , Francesco Mottes , Ariana-Dalia Vlad , Michael P. Brenner , Alma dal Co

Cortical circuits are characterized by exquisitely complex connectivity patterns that emerge during development from undifferentiated networks. The development of these circuits is governed by a combination of precise molecular cues that…

Neurons and Cognition · Quantitative Biology 2020-09-15 Joseph Olson , Gabriel Kreiman

During organogenesis, developmental programs governed by Gene Regulatory Networks (GRN) define the functionality, size and shape of the different constituents of living organisms. Robustness, thus, is an essential characteristic that GRNs…

Tissues and Organs · Quantitative Biology 2015-01-07 Daniel Aguilar-Hidalgo , M. Carmen Lemos , Antonio Córdoba

The origins of spontaneous movements have been investigated in human as well as in other vertebrates. Studies have reported an increase in neuronal activity one second before the onset of a given movement: this is known as readiness…

Neurons and Cognition · Quantitative Biology 2020-12-22 Selma Mehyaoui