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We introduce a new concept of a subgraph class called a superbubble for analyzing assembly graphs, and propose an efficient algorithm for detecting it. Most assembly algorithms utilize assembly graphs like the de Bruijn graph or the overlap…

Data Structures and Algorithms · Computer Science 2013-08-02 Taku Onodera , Kunihiko Sadakane , Tetsuo Shibuya

We develop an experimental algorithm for the exact solving of the maximum independent set problem. The algorithm consecutively finds the maximal independent sets of vertices in an arbitrary undirected graph such that the next such set…

Data Structures and Algorithms · Computer Science 2016-03-02 Anatoly D. Plotnikov

We give algorithms for geometric graph problems in the modern parallel models inspired by MapReduce. For example, for the Minimum Spanning Tree (MST) problem over a set of points in the two-dimensional space, our algorithm computes a…

Data Structures and Algorithms · Computer Science 2014-01-07 Alexandr Andoni , Aleksandar Nikolov , Krzysztof Onak , Grigory Yaroslavtsev

Structural balance theory studies stability in networks. Given a $n$-vertex complete graph $G=(V,E)$ whose edges are labeled positive or negative, the graph is considered \emph{balanced} if every triangle either consists of three positive…

Data Structures and Algorithms · Computer Science 2023-06-02 Vikrant Ashvinkumar , Sepehr Assadi , Chengyuan Deng , Jie Gao , Chen Wang

Learning-based methods for routing have gained significant attention in recent years, both in single-objective and multi-objective contexts. Yet, existing methods are unsuitable for routing on multigraphs, which feature multiple edges with…

Machine Learning · Computer Science 2026-02-23 Filip Rydin , Attila Lischka , Jiaming Wu , Morteza Haghir Chehreghani , Balázs Kulcsár

This is a graduate-level introduction to graph theory, corresponding to a quarter-long course. It covers simple graphs, multigraphs as well as their directed analogues, and more restrictive classes such as tournaments, trees and…

History and Overview · Mathematics 2025-06-10 Darij Grinberg

Considerable effort has been devoted to the development of streaming algorithms for analyzing massive graphs. Unfortunately, many results have been negative, establishing that a wide variety of problems require $\Omega(n^2)$ space to solve.…

Data Structures and Algorithms · Computer Science 2015-08-11 Justin Thaler

The Steiner tree problem aims to determine a minimum edge-weighted tree that spans a given set of terminal vertices from a given graph. In the past decade, a considerable number of algorithms have been developed to solve this…

Data Structures and Algorithms · Computer Science 2024-08-23 Ming Sun , Xinyu Wu , Yi Zhou , Jin-Kao Hao , Zhang-Hua Fu

The semi-streaming model is a variant of the streaming model frequently used for the computation of graph problems. It allows the edges of an $n$-node input graph to be read sequentially in $p$ passes using $\tilde{O}(n)$ space. In this…

Data Structures and Algorithms · Computer Science 2020-01-22 Yi-Jun Chang , Martin Farach-Colton , Tsan-Sheng Hsu , Meng-Tsung Tsai

Recently, one has seen a surge of interest in developing such methods including ones for learning such representations for (undirected) graphs (while preserving important properties). However, most of the work to date on embedding graphs…

Social and Information Networks · Computer Science 2018-11-30 Jiankai Sun , Srinivasan Parthasarathy

Predicting a user's preference in a short anonymous interaction session instead of long-term history is a challenging problem in the real-life session-based recommendation, e.g., e-commerce and media stream. Recent research of the…

Information Retrieval · Computer Science 2021-07-12 Ruihong Qiu , Jingjing Li , Zi Huang , Hongzhi Yin

Subgraph enumeration problems ask to output all subgraphs of an input graph that belongs to the specified graph class or satisfy the given constraint. These problems have been widely studied in theoretical computer science. As far, many…

Data Structures and Algorithms · Computer Science 2018-07-03 Kunihiro Wasa , Takeaki Uno

We study the problem of estimating the number of triangles in a graph stream. No streaming algorithm can get sublinear space on all graphs, so methods in this area bound the space in terms of parameters of the input graph such as the…

Data Structures and Algorithms · Computer Science 2019-04-18 John Kallaugher , Eric Price

Graph embedding maps graph nodes to low-dimensional vectors, and is widely adopted in machine learning tasks. The increasing availability of billion-edge graphs underscores the importance of learning efficient and effective embeddings on…

Distributed, Parallel, and Cluster Computing · Computer Science 2024-02-27 Peng Fang , Arijit Khan , Siqiang Luo , Fang Wang , Dan Feng , Zhenli Li , Wei Yin , Yuchao Cao

We study the problem of computing a shortest tour that visits a sequence of $k$ polygons $P_1,\dots, P_k$ with a total number of $n$ vertices. A tour is an oriented curve such that there exist points $p_i\in P_i$ for all $i$ where $p_i$…

Computational Geometry · Computer Science 2026-05-14 Katrin Casel , Sándor Kisfaludi-Bak , Linda Kleist , Jeroen S. K. Lamme , Eunjin Oh , Yanheng Wang

We show that for any fixed integer $k \geq 0$, there exists an algorithm that computes the diameter and the eccentricies of all vertices of an input unweighted, undirected $n$-vertex graph of Euler genus at most $k$ in time \[…

Data Structures and Algorithms · Computer Science 2025-02-12 Kacper Kluk , Marcin Pilipczuk , Michał Pilipczuk , Giannos Stamoulis

Graphs are now ubiquitous in almost every field of research. Recently, new research areas devoted to the analysis of graphs and data associated to their vertices have emerged. Focusing on dynamical processes, we propose a fast, robust and…

Social and Information Networks · Computer Science 2016-02-02 Kirell Benzi , Benjamin Ricaud , Pierre Vandergheynst

Intersection graphs are well-studied in the area of graph algorithms. Some intersection graph classes are known to have algorithms enumerating all unlabeled graphs by reverse search. Since these algorithms output graphs one by one and the…

Data Structures and Algorithms · Computer Science 2022-12-15 Jun Kawahara , Toshiki Saitoh , Hirokazu Takeda , Ryo Yoshinaka , Yui Yoshioka

A chordless cycle (induced cycle) $C$ of a graph is a cycle without any chord, meaning that there is no edge outside the cycle connecting two vertices of the cycle. A chordless path is defined similarly. In this paper, we consider the…

Data Structures and Algorithms · Computer Science 2014-05-01 Takeaki Uno , Hiroko Satoh

Counting the frequency of small subgraphs is a fundamental technique in network analysis across various domains, most notably in bioinformatics and social networks. The special case of triangle counting has received much attention. Getting…

Data Structures and Algorithms · Computer Science 2014-11-19 Madhav Jha , C. Seshadhri , Ali Pinar