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Spaced seeds are important tools for similarity search in bioinformatics, and using several seeds together often significantly improves their performance. With existing approaches, however, for each seed we keep a separate linear-size data…

Data Structures and Algorithms · Computer Science 2014-03-11 Travis Gagie , Giovanni Manzini , Daniel Valenzuela

The problem of storing a set of strings --- a string dictionary --- in compact form appears naturally in many cases. While classically it has represented a small part of the whole data to be processed (e.g., for Natural Language processing…

Data Structures and Algorithms · Computer Science 2011-01-31 Nieves R. Brisaboa , Rodrigo Cánovas , Miguel A. Martínez-Prieto , Gonzalo Navarro

We propose a new linear-size data structure which provides a fast access to all palindromic substrings of a string or a set of strings. This structure inherits some ideas from the construction of both the suffix trie and suffix tree. Using…

Data Structures and Algorithms · Computer Science 2015-08-18 Mikhail Rubinchik , Arseny M. Shur

Training and deploying deep learning models in real-world applications require processing large amounts of data. This is a challenging task when the amount of data grows to a hundred terabytes, or even, petabyte-scale. We introduce a hybrid…

Distributed, Parallel, and Cluster Computing · Computer Science 2019-10-17 Davit Buniatyan

Graph pattern matching is a fundamental operation for the analysis and exploration ofdata graphs. In thispaper, we presenta novel approachfor efficiently finding homomorphic matches for hybrid graph patterns, where each pattern edge may be…

Databases · Computer Science 2022-09-29 Xiaoying Wu , Dimitri Theodoratos , Nikos Mamoulis , Michael Lan

Similarity-based vector search facilitates many important applications such as search and recommendation but is limited by the memory capacity and bandwidth of a single machine due to large datasets and intensive data read. In this paper,…

Distributed, Parallel, and Cluster Computing · Computer Science 2025-07-10 Xiangyu Zhi , Meng Chen , Xiao Yan , Baotong Lu , Hui Li , Qianxi Zhang , Qi Chen , James Cheng

Most distributed storage systems provide limited abilities for querying data by attributes other than their primary keys. Supporting efficient search on secondary attributes is challenging as applications pose varying requirements to query…

Distributed, Parallel, and Cluster Computing · Computer Science 2018-03-13 Dimitrios Vasilas , Marc Shapiro , Bradley King

To stay competitive in today's data driven economy, enterprises large and small are turning to stream processing platforms to process high volume, high velocity, and diverse streams of data (fast data) as they arrive. Low-level programming…

Databases · Computer Science 2015-11-13 Milinda Pathirage , Beth Plale

Similarity-preserving hashing is a widely-used method for nearest neighbour search in large-scale image retrieval tasks. There has been considerable research on generating efficient image representation via the deep-network-based hashing…

Computer Vision and Pattern Recognition · Computer Science 2017-10-20 Hanjiang Lai , Yan Pan

Text retrieval using learned sparse representations of queries and documents has, over the years, evolved into a highly effective approach to search. It is thanks to recent advances in approximate nearest neighbor search-with the emergence…

Information Retrieval · Computer Science 2026-02-06 Sebastian Bruch , Martino Fontana , Franco Maria Nardini , Cosimo Rulli , Rossano Venturini

Let S be a finite, ordered alphabet, and let x = x_1 x_2 ... x_n be a string over S. A "secondary index" for x answers alphabet range queries of the form: Given a range [a_l,a_r] over S, return the set I_{[a_l;a_r]} = {i |x_i \in [a_l;…

Databases · Computer Science 2008-11-19 Rasmus Pagh , S. Srinivasa Rao

Embedded distributed inference of Neural Networks has emerged as a promising approach for deploying machine-learning models on resource-constrained devices in an efficient and scalable manner. The inference task is distributed across a…

Distributed, Parallel, and Cluster Computing · Computer Science 2024-05-07 Federico Nicolás Peccia , Oliver Bringmann

An All-to-All Comparison problem is where every element of a data set is compared with every other element. This is analogous to projective planes and affine planes where every pair of points share a common line. For large data sets, the…

Combinatorics · Mathematics 2023-08-30 Joanne L. Hall , Wayne Kelly , Yu-Chu Tian

This paper proposes a general system for compute-intensive graph mining tasks that find from a big graph all subgraphs that satisfy certain requirements (e.g., graph matching and community detection). Due to the broad range of applications…

Distributed, Parallel, and Cluster Computing · Computer Science 2017-09-12 Da Yan , Hongzhi Chen , James Cheng , M. Tamer Özsu , Qizhen Zhang , John C. S. Lui

In this paper, we propose a scalable and highly efficient index structure for the reachability problem over graphs. We build on the well-known node interval labeling scheme where the set of vertices reachable from a particular node is…

Databases · Computer Science 2012-12-03 Stephan Seufert , Avishek Anand , Srikanta Bedathur , Gerhard Weikum

Similarity search approaches based on graph walks have recently attained outstanding speed-accuracy trade-offs, taking aside the memory requirements. In this paper, we revisit these approaches by considering, additionally, the memory…

Computer Vision and Pattern Recognition · Computer Science 2018-06-07 Matthijs Douze , Alexandre Sablayrolles , Hervé Jégou

This paper presents the design, implementation, and evaluation of the PyTorch distributed data parallel module. PyTorch is a widely-adopted scientific computing package used in deep learning research and applications. Recent advances in…

Distributed, Parallel, and Cluster Computing · Computer Science 2020-06-30 Shen Li , Yanli Zhao , Rohan Varma , Omkar Salpekar , Pieter Noordhuis , Teng Li , Adam Paszke , Jeff Smith , Brian Vaughan , Pritam Damania , Soumith Chintala

Considering the diverse nature of real-world distributed applications that makes it hard to identify a representative subset of distributed benchmarks, we focus on their underlying distributed algorithms. We present and characterize a new…

Distributed, Parallel, and Cluster Computing · Computer Science 2013-10-11 Suyash Gupta , V. Krishna Nandivada

Since local LLM inference on resource-constrained edge devices imposes a severe performance bottleneck, this paper proposes distributed prompt caching to enhance inference performance by cooperatively sharing intermediate processing states…

Machine Learning · Computer Science 2026-04-13 Hiroki Matsutani , Naoki Matsuda , Naoto Sugiura

Finding desired information from large data set is a difficult problem. Information retrieval is concerned with the structure, analysis, organization, storage, searching, and retrieval of information. Index is the main constituent of an IR…

Information Retrieval · Computer Science 2012-09-26 Md. Abdullah al Mamun , Md. Hanif , Md. Rakib Uddin , Tanvir Ahmed , Md. Mofizul Islam
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