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Stencils represent a class of computational patterns where an output grid point depends on a fixed shape of neighboring points in an input grid. Stencil computations are prevalent in scientific applications engaging a significant portion of…

Distributed, Parallel, and Cluster Computing · Computer Science 2021-03-24 Jesmin Jahan Tithi , Fabrizio Petrini , Hongbo Rong , Andrei Valentin , Carl Ebeling

Symbolic execution is a powerful verification tool for hardware designs, but suffers from the path explosion problem. We introduce a new approach, piecewise composition, which leverages the modular structure of hardware to transfer the work…

Cryptography and Security · Computer Science 2023-04-13 Kaki Ryan , Cynthia Sturton

Patient similarity assessment (PSA) is pivotal to evidence-based and personalized medicine, enabled by analyzing the increasingly available electronic health records (EHRs). However, machine learning approaches for PSA has to deal with…

Machine Learning · Computer Science 2022-02-04 Xian Wei , See Kiong Ng , Tongtong Zhang , Yingjie Liu

An (encoded) decision problem is a pair (E, F) where E=words that encode instances of the problem, F=words to be accepted. We use "strings" in a technical sense. With an NP problem (E, F) we associate the "logogram" of F relative to E,…

Computational Complexity · Computer Science 2008-02-14 Silvano Di Zenzo

Deep learning has made significant progress in protein structure prediction, advancing the development of computational biology. However, despite the high accuracy achieved in predicting single-chain structures, a significant number of…

Biomolecules · Quantitative Biology 2024-03-08 Zhaoqun Li , Jingcheng Yu , Qiwei Ye

Current methods for detecting spurious correlations rely on analyzing dataset statistics or error patterns, leaving many harmful shortcuts invisible when counterexamples are absent. We introduce BEE (Bridging Explainability and Embeddings),…

Artificial Intelligence · Computer Science 2026-02-12 Cristian Daniel Păduraru , Antonio Bărbălau , Radu Filipescu , Andrei Liviu Nicolicioiu , Elena Burceanu

Simulation-based inference (SBI) is constantly in search of more expressive and efficient algorithms to accurately infer the parameters of complex simulation models. In line with this goal, we present consistency models for posterior…

Machine Learning · Computer Science 2024-11-05 Marvin Schmitt , Valentin Pratz , Ullrich Köthe , Paul-Christian Bürkner , Stefan T Radev

Software analytics often builds from labeled data. Labeling can be slow, error prone, and expensive. When human expertise is scarce, SE researchers sometimes ask large language models (LLMs) for the missing labels. While this has been…

Software Engineering · Computer Science 2026-03-25 Lohith Senthilkumar , Tim Menzies

The construction and analysis of an abstract reachability tree (ART) are the basis for a successful method for software verification. The ART represents unwindings of the control-flow graph of the program. Traditionally, a transition of the…

Software Engineering · Computer Science 2009-05-01 Dirk Beyer , Alessandro Cimatti , Alberto Griggio , M. Erkan Keremoglu , Roberto Sebastiani

Developers today use significant amounts of open source code, surfacing the need for ways to automatically audit and upgrade library dependencies, and giving rise to the subfield of Software Composition Analysis (SCA). SCA products are…

Software Engineering · Computer Science 2019-10-01 Darius Foo , Jason Yeo , Hao Xiao , Asankhaya Sharma

Physical models of biological systems can become difficult to interpret when they have a large number of parameters. But the models themselves actually depend on (i.e. are sensitive to) only a subset of those parameters. Rigorously…

Biological Physics · Physics 2018-11-27 Chieh-Ting Hsu , Gary J. Brouhard , Paul François

Stable Logic Programming (SLP) is an emergent, alternative style of logic programming: each solution to a problem is represented by a stable model of a deductive database/function-free logic program encoding the problem itself. Several…

Artificial Intelligence · Computer Science 2014-02-25 Gianpaolo Brignoli , Stefania Costantini , Ottavio D'Antona , Alessandro Provetti

Data Science aims to extract meaningful knowledge from unorganised data. Real datasets usually come in the form of a cloud of points with only pairwise distances. Numerous applications require to visualise an overall shape of a noisy cloud…

Computational Geometry · Computer Science 2021-03-01 Vitaliy Kurlin , Philip Smith

Given a graph G where each node is associated with a set of attributes, attributed network embedding (ANE) maps each node v in G to a compact vector Xv, which can be used in downstream machine learning tasks. Ideally, Xv should capture node…

Social and Information Networks · Computer Science 2023-03-31 Renchi Yang , Jieming Shi , Xiaokui Xiao , Yin Yang , Sourav S. Bhowmick , Juncheng Liu

Protein function does not solely depend on structure but often relies on dynamical transitions between distinct conformations. Despite this fact, our ability to characterize or predict protein dynamics is substantially less developed…

Statistical Mechanics · Physics 2026-05-08 Michael A. Sauer , Souvik Mondal , Brandon Neff , Sthitadhi Maiti , Matthias Heyden

A serious threat today is malicious executables. It is designed to damage computer system and some of them spread over network without the knowledge of the owner using the system. Two approaches have been derived for it i.e. Signature Based…

Cryptography and Security · Computer Science 2013-08-14 Usukhbayar Baldangombo , Nyamjav Jambaljav , Shi-Jinn Horng

In this paper, we study randomized methods for feedback design of uncertain systems. The first contribution is to derive the sample complexity of various constrained control problems. In particular, we show the key role played by the…

Systems and Control · Computer Science 2014-07-22 T. Alamo , R. Tempo , A. Luque , D. R. Ramirez

The aim is to identify faulty predicates which have strong effect on program failure. Statistical debugging techniques are amongst best methods for pinpointing defects within the program source code. However, they have some drawbacks. They…

Software Engineering · Computer Science 2016-12-20 Farid Feyzi , Esmaeel Nikravan , Saeed Parsa

Understanding the behavior of simulated architectures in gem5 is critical for studying complex, deeply integrated computing systems. However, conventional analysis methods provide only an indirect view of the simulated system internals. In…

Hardware Architecture · Computer Science 2026-05-05 Johan Söderström , Rashid Aligholipour , Yuan Yao

This paper introduces a Fault Diagnosis (Detection, Isolation, and Estimation) method using Set-Membership Estimation (SME) designed for a class of nonlinear systems that are linear to the fault parameters. The methodology advances fault…

Robotics · Computer Science 2024-11-06 A. Tsolakis , L. Ferranti , V. Reppa