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The Genomic Foundation Model (GFM) paradigm is expected to facilitate the extraction of generalizable representations from massive genomic data, thereby enabling their application across a spectrum of downstream applications. Despite…

Genomics · Quantitative Biology 2024-06-06 Zicheng Liu , Jiahui Li , Siyuan Li , Zelin Zang , Cheng Tan , Yufei Huang , Yajing Bai , Stan Z. Li

As the number of novel data-driven approaches to material science continues to grow, it is crucial to perform consistent quality, reliability and applicability assessments of model performance. In this paper, we benchmark the Materials…

Materials Science · Physics 2021-08-04 Pierre-Paul De Breuck , Matthew L. Evans , Gian-Marco Rignanese

Phase-field models have proven indispensable for deciphering the microstructure complexities inherent in multicomponent systems. The confluence of varying phase molar volumes presents unique challenges. Understanding the impact of molar…

Materials Science · Physics 2025-03-25 Chengyin Wu , Yanzhou Ji

Applications of first passage times in stochastic processes arise across a wide range of length and time scales in biological settings. After an initial technical overview, we survey representative applications and their corresponding…

Statistical Mechanics · Physics 2026-05-12 Tom Chou , Maria R. D'Orsogna

In this work, we consider pressurized phase-field fracture problems in nearly and fully incompressible materials. To this end, a mixed form for the solid equations is proposed. To enhance the accuracy of the spatial discretization, a…

Numerical Analysis · Mathematics 2022-09-21 Seshadri Basava , Katrin Mang , Mirjam Walloth , Thomas Wick , Winnifried Wollner

The phase estimation algorithm is a powerful quantum algorithm with applications in cryptography, number theory, and simulation of quantum systems. We use this algorithm to simulate the time evolution of a system of two spin-1/2 particles…

Quantum Physics · Physics 2021-05-12 Scott Johnstun , Jean-François Van Huele

In this work, we develop an adaptive algorithm for the efficient numerical solution of the minimum compliance problem in topology optimization. The algorithm employs the phase field approximation and continuous density field. The adaptive…

Optimization and Control · Mathematics 2024-04-18 Bangti Jin , Jing Li , Yifeng Xu , Shengfeng Zhu

The reproduction and replication of novel results has become a major issue for a number of scientific disciplines. In computer science and related computational disciplines such as systems biology, the issues closely revolve around the…

Software Engineering · Computer Science 2014-09-17 Tom Crick , Benjamin A. Hall , Samin Ishtiaq

Phase-Field Crystal (PFC) models are able to resolve atomic length scale features of materials during temporal evolution over diffusive time scales. Traditional PFC models contain solid and liquid phases, however many important materials…

Materials Science · Physics 2015-06-16 Edwin J. Schwalbach , James A. Warren , Kuo-An Wu , Peter W. Voorhees

The prevalence of scientific workflows with high computational demands calls for their execution on various distributed computing platforms, including large-scale leadership-class high-performance computing (HPC) clusters. To handle the…

Distributed, Parallel, and Cluster Computing · Computer Science 2023-02-10 Tainã Coleman , Henri Casanova , Ketan Maheshwari , Loïc Pottier , Sean R. Wilkinson , Justin Wozniak , Frédéric Suter , Mallikarjun Shankar , Rafael Ferreira da Silva

The design of structural & functional materials for specialized applications is being fueled by rapid advancements in materials synthesis, characterization, manufacturing, with sophisticated computational materials modeling frameworks that…

Over the last decade, data-driven methods have surged in popularity, emerging as valuable tools for control theory. As such, neural network approximations of control feedback laws, system dynamics, and even Lyapunov functions have attracted…

Systems and Control · Electrical Eng. & Systems 2024-05-27 Luke Bhan , Yuexin Bian , Miroslav Krstic , Yuanyuan Shi

Phase transition problems on curved surfaces can lead to a panopticon of fascinating patterns. In this paper we consider finite element approximations of phase field models with a spatially inhomogeneous and anisotropic surface energy…

Numerical Analysis · Mathematics 2025-06-09 Harald Garcke , Robert Nürnberg

Reconstruction of a continuous surface of two-dimensional manifold from its raw, discrete point cloud observation is a long-standing problem. The problem is technically ill-posed, and becomes more difficult considering that various sensing…

Computer Vision and Pattern Recognition · Computer Science 2022-05-06 Zhangjin Huang , Yuxin Wen , Zihao Wang , Jinjuan Ren , Kui Jia

Reliable empirical models such as those used in software effort estimation or defect prediction are inherently dependent on the data from which they are built. As demands for process and product improvement continue to grow, the quality of…

Software Engineering · Computer Science 2021-06-14 Michael Franklin Bosu , Stephen G. MacDonell

The performance gap between predicted and actual energy consumption in the building domain remains an unsolved problem in practice. The gap exists differently in both current mainstream methods: the first-principles model and the machine…

Computational Engineering, Finance, and Science · Computer Science 2022-06-02 Xia Chen , Tong Guo , Martin Kriegel , Philipp Geyer

Segmentation remains an important problem in image processing. For homogeneous (piecewise smooth) images, a number of important models have been developed and refined over the past several decades. However, these models often fail when…

Computer Vision and Pattern Recognition · Computer Science 2016-07-01 Duy Hoang Thai , Lucas Mentch

In this paper two intensive problems faced during software application's analysis and development process arose by the software industry are briefly conversed i.e. identification of fault proneness and increase in rate of variability in the…

Software Engineering · Computer Science 2010-11-16 Zeeshan Ahmed , Saman Majeed

Structural materials are broadly used in applications such as nuclear vessels, high-temperature processes, and civil construction. Usually, during their placing and lifespan, they may present free or chemically bonded liquid phases in their…

Materials Science · Physics 2021-03-29 M. H. Moreira , R. F. Ausas , S. Dal Pont , P. I. Pelissari , A. P. Luz , V. C. Pandolfelli

Code Large Language Models (CLLMs) have exhibited outstanding performance in program synthesis, attracting the focus of the research community. The evaluation of CLLM's program synthesis capability has generally relied on manually curated…

Software Engineering · Computer Science 2025-05-13 Longtian Wang , Tianlin Li , Xiaofei Xie , Yuhan Zhi , Jian Wang , Chao Shen
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