English
Related papers

Related papers: Prediction of Prokaryotic and Eukaryotic Promoters…

200 papers

This project intends to study a cardiovascular disease risk early warning model based on one-dimensional convolutional neural networks. First, the missing values of 13 physiological and symptom indicators such as patient age, blood glucose,…

Machine Learning · Computer Science 2024-06-14 Yuxiang Hu , Jinxin Hu , Ting Xu , Bo Zhang , Jiajie Yuan , Haozhang Deng

We present a novel approach to neural response prediction that incorporates higher-order operations directly within convolutional neural networks (CNNs). Our model extends traditional 3D CNNs by embedding higher-order operations within the…

Computer Vision and Pattern Recognition · Computer Science 2025-05-13 Simone Azeglio , Victor Calbiague Garcia , Guilhem Glaziou , Peter Neri , Olivier Marre , Ulisse Ferrari

Network analysis is a powerful way of modeling chromatin interactions. Assortativity is a network property used in social sciences to identify factors affecting how people establish social ties. We propose a new approach, using chromatin…

Human motion modeling is a classic problem in computer vision and graphics. Challenges in modeling human motion include high dimensional prediction as well as extremely complicated dynamics.We present a novel approach to human motion…

Computer Vision and Pattern Recognition · Computer Science 2018-05-03 Chen Li , Zhen Zhang , Wee Sun Lee , Gim Hee Lee

Deep Convolutional Neural Networks (CNNs) for image classification successively alternate convolutions and downsampling operations, such as pooling layers or strided convolutions, resulting in lower resolution features the deeper the…

Computer Vision and Pattern Recognition · Computer Science 2022-09-29 Ioannis Vezakis , Antonios Vezakis , Sofia Gourtsoyianni , Vassilis Koutoulidis , George K. Matsopoulos , Dimitrios Koutsouris

Knowledge of molecular subtypes of gliomas can provide valuable information for tailored therapies. This study aimed to investigate the use of deep convolutional neural networks (DCNNs) for noninvasive glioma subtyping with radiological…

Image and Video Processing · Electrical Eng. & Systems 2022-03-14 Dong Wei , Yiming Li , Yinyan Wang , Tianyi Qian , Yefeng Zheng

We present PredProp, a method for optimization of weights and states in predictive coding networks (PCNs) based on the precision of propagated errors and neural activity. PredProp jointly addresses inference and learning via stochastic…

Machine Learning · Computer Science 2023-05-08 André Ofner , Sebastian Stober

Big Data works perfectly along with Deep learning to extract knowledge from a huge amount of data. However, this processing could take a lot of training time. Genomics is a Big Data science with high dimensionality. It relies on deep…

Neural and Evolutionary Computing · Computer Science 2024-05-28 Tasnim Assali , Zayneb Trabelsi Ayoub , Sofiane Ouni

This research addresses the challenge of characterizing the complexity and unpredictability of basins within various dynamical systems. The main focus is on demonstrating the efficiency of convolutional neural networks (CNNs) in this field.…

Machine Learning · Computer Science 2024-06-18 David Valle , Alexandre Wagemakers , Miguel A. F. Sanjuán

Peptide sequencing-the process of identifying amino acid sequences from mass spectrometry data-is a fundamental task in proteomics. Non-Autoregressive Transformers (NATs) have proven highly effective for this task, outperforming traditional…

Biomolecules · Quantitative Biology 2025-06-17 Xiang Zhang , Jiaqi Wei , Zijie Qiu , Sheng Xu , Nanqing Dong , Zhiqiang Gao , Siqi Sun

Deep convolutional neural networks are a powerful model class for a range of computer vision problems, but it is difficult to interpret the image filtering process they implement, given their sheer size. In this work, we introduce a method…

Computer Vision and Pattern Recognition · Computer Science 2023-04-18 Chris Hamblin , Talia Konkle , George Alvarez

Despite the increasing scale of genome language models (gLMs), their ability to decode the function of regulatory sequences remains unclear. gLM pretraining relies on sequence reconstruction, which may struggle due to the noisy, rapidly…

Genomics · Quantitative Biology 2026-05-26 Cameron Dufault , Scott Xu , Alan M. Moses

The customizable nature of deep learning models have allowed them to be successful predictors in various disciplines. These models are often trained with respect to thousands or millions of instances for complicated problems, but the…

Machine Learning · Computer Science 2019-12-24 Drimik Roy Chowdhury , Muhammad Firmansyah Kasim

Deep Convolutional features extracted from a comprehensive labeled dataset, contain substantial representations which could be effectively used in a new domain. Despite the fact that generic features achieved good results in many visual…

Computer Vision and Pattern Recognition · Computer Science 2018-05-06 Qun Liu , Supratik Mukhopadhyay

Purpose: This study aimed to enhance protein sequence classification using natural language processing (NLP) techniques while addressing the impact of sequence similarity on model performance. We compared various machine learning and deep…

Quantitative Methods · Quantitative Biology 2025-05-26 Huma Perveen , Julie Weeds

Deep convolutional neural networks (CNNs) have had a major impact in most areas of image understanding, including object category detection. In object detection, methods such as R-CNN have obtained excellent results by integrating CNNs with…

Computer Vision and Pattern Recognition · Computer Science 2015-06-24 Karel Lenc , Andrea Vedaldi

Enhancer-promoter interactions (EPIs) regulate the expression of specific genes in cells, and EPIs are important for understanding gene regulation, cell differentiation and disease mechanisms. EPI identification through the wet experiments…

Genomics · Quantitative Biology 2021-01-01 Shuai Liu , Xinran Xu , Zhihao Yang , Xiaohan Zhao , Wen Zhang

In this paper, we propose a novel deep learning method based on a Convolutional Neural Network (CNN) that simultaneously detects and geolocates plantation-rows while counting its plants considering highly-dense plantation configurations.…

Deep convolutional neural networks (CNNs) have been shown to predict poverty and development indicators from satellite images with surprising accuracy. This paper presents a first attempt at analyzing the CNNs responses in detail and…

Computer Vision and Pattern Recognition · Computer Science 2023-12-04 Hamid Sarmadi , Thorsteinn Rögnvaldsson , Nils Roger Carlsson , Mattias Ohlsson , Ibrahim Wahab , Ola Hall

In this era of artificial intelligence, deep neural networks like Convolutional Neural Networks (CNNs) have emerged as front-runners, often surpassing human capabilities. These deep networks are often perceived as the panacea for all…

Computer Vision and Pattern Recognition · Computer Science 2023-11-15 Neeraj Kumar Singh , Nikhil R. Pal