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Clustering genotypes based upon their phenotypic characteristics is used to obtain diverse sets of parents that are useful in their breeding programs. The Hierarchical Clustering (HC) algorithm is the current standard in clustering of…

Machine Learning · Computer Science 2020-09-22 Aditya A. Shastri , Kapil Ahuja , Milind B. Ratnaparkhe , Yann Busnel

Directed networks are broadly used to represent asymmetric relationships among units. Co-clustering aims to cluster the senders and receivers of directed networks simultaneously. In particular, the well-known spectral clustering algorithm…

Machine Learning · Statistics 2022-04-12 Xiao Guo , Yixuan Qiu , Hai Zhang , Xiangyu Chang

Here we present a quantum algorithm for clustering data based on a variational quantum circuit. The algorithm allows to classify data into many clusters, and can easily be implemented in few-qubit Noisy Intermediate-Scale Quantum (NISQ)…

Quantum Physics · Physics 2024-01-08 Pablo Bermejo , Roman Orus

In this article, we develop a clique-based method for social network clustering. We introduce a new index to evaluate the quality of clustering results, and propose an efficient algorithm based on recursive bipartition to maximize an…

Social and Information Networks · Computer Science 2018-05-11 Guang Ouyang , Dipak K. Dey , Panpan Zhang

Spectral clustering is one of the most popular clustering methods. However, how to balance the efficiency and effectiveness of the large-scale spectral clustering with limited computing resources has not been properly solved for a long…

Machine Learning · Computer Science 2022-07-12 Hongmin Li , Xiucai Ye , Akira Imakura , Tetsuya Sakurai

Graph clustering is a central topic in unsupervised learning with a multitude of practical applications. In recent years, multi-view graph clustering has gained a lot of attention for its applicability to real-world instances where one has…

Machine Learning · Computer Science 2024-06-10 Vincent Cohen-Addad , Tommaso d'Orsi , Silvio Lattanzi , Rajai Nasser

In network inference applications, it is often desirable to detect community structure, namely to cluster vertices into groups, or blocks, according to some measure of similarity. Beyond mere adjacency matrices, many real networks also…

Social and Information Networks · Computer Science 2021-08-06 Cong Mu , Angelo Mele , Lingxin Hao , Joshua Cape , Avanti Athreya , Carey E. Priebe

Correlation clustering is a central topic in unsupervised learning, with many applications in ML and data mining. In correlation clustering, one receives as input a signed graph and the goal is to partition it to minimize the number of…

Data Structures and Algorithms · Computer Science 2021-06-17 Vincent Cohen-Addad , Silvio Lattanzi , Slobodan Mitrović , Ashkan Norouzi-Fard , Nikos Parotsidis , Jakub Tarnawski

This paper investigates graph clustering in the planted cluster model in the presence of {\em small clusters}. Traditional results dictate that for an algorithm to provably correctly recover the clusters, {\em all} clusters must be…

Machine Learning · Computer Science 2013-02-21 Nir Ailon , Yudong Chen , Xu Huan

The well-known graph-based clustering methods, including spectral clustering, symmetric non-negative matrix factorization, and doubly stochastic normalization, can be viewed as relaxations of the kernel $k$-means approach. However, we posit…

Machine Learning · Computer Science 2025-09-24 Wenlong Lyu , Yuheng Jia , Hui Liu , Junhui Hou

Network clustering reveals the organization of a network or corresponding complex system with elements represented as vertices and interactions as edges in a (directed, weighted) graph. Although the notion of clustering can be somewhat…

Machine Learning · Statistics 2017-11-15 Yongjin Park , Joel S. Bader

Constrained clustering has been well-studied for algorithms such as $K$-means and hierarchical clustering. However, how to satisfy many constraints in these algorithmic settings has been shown to be intractable. One alternative to encode…

Machine Learning · Computer Science 2012-09-24 Xiang Wang , Buyue Qian , Ian Davidson

As a kind of basic machine learning method, clustering algorithms group data points into different categories based on their similarity or distribution. We present a clustering algorithm by finding hyper-planes to distinguish the data…

Computer Vision and Pattern Recognition · Computer Science 2020-04-28 Luhong Diao , Jinying Gao1 , Manman Deng

Given a point set S and an unknown metric d on S, we study the problem of efficiently partitioning S into k clusters while querying few distances between the points. In our model we assume that we have access to one versus all queries that…

Machine Learning · Computer Science 2014-08-12 Konstantin Voevodski , Maria-Florina Balcan , Heiko Roglin , Shang-Hua Teng , Yu Xia

We consider the problem of multiway clustering in the presence of unknown degree heterogeneity. Such data problems arise commonly in applications such as recommendation system, neuroimaging, community detection, and hypergraph partitions in…

Statistics Theory · Mathematics 2023-01-25 Jiaxin Hu , Miaoyan Wang

In this paper we present a new dynamical systems algorithm for clustering in hyperspectral images. The main idea of the algorithm is that data points are \`pushed\' in the direction of increasing density and groups of pixels that end up in…

Computer Vision and Pattern Recognition · Computer Science 2022-07-22 William F. Basener , Alexey Castrodad , David Messinger , Jennifer Mahle , Paul Prue

Given a point set S and an unknown metric d on S, we study the problem of efficiently partitioning S into k clusters while querying few distances between the points. In our model we assume that we have access to one versus all queries that…

Data Structures and Algorithms · Computer Science 2011-05-10 Konstantin Voevodski , Maria-Florina Balcan , Heiko Roglin , Shang-Hua Teng , Yu Xia

Spectral clustering is a powerful method for finding structure in a dataset through the eigenvectors of a similarity matrix. It often outperforms traditional clustering algorithms such as $k$-means when the structure of the individual…

Numerical Analysis · Mathematics 2019-04-26 Paola Favati , Grazia Lotti , Ornella Menchi , Francesco Romani

Random walks can reveal communities or clusters in networks, because they are more likely to stay within a cluster than leave it. Thus, one family of community detection algorithms uses random walks to measure distance between pairs of…

Disordered Systems and Neural Networks · Physics 2023-08-11 Eric Chalmers , Artur Luczak

We discuss a randomized strong rank-revealing QR factorization that effectively reveals the spectrum of a matrix $\textbf{M}$. This factorization can be used to address problems such as selecting a subset of the columns of $\textbf{M}$,…

Numerical Analysis · Mathematics 2025-03-25 Laura Grigori , Zhipeng Xue