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A commonly used paradigm for representing graphs is to use a vector that contains normalized frequencies of occurrence of certain motifs or sub-graphs. This vector representation can be used in a variety of applications, such as, for…

Machine Learning · Computer Science 2014-03-05 Pinar Yanardag , S. V. N. Vishwanathan

A dominating set $D$ of a graph $G$ is a set of vertices such that any vertex in $G$ is in $D$ or its neighbor is in $D$. Enumeration of minimal dominating sets in a graph is one of central problems in enumeration study since enumeration of…

Data Structures and Algorithms · Computer Science 2020-09-23 Kazuhiro Kurita , Kunihiro Wasa , Hiroki Arimura , Takeaki Uno

Motivated by chemical applications, we revisit and extend a family of positive definite kernels for graphs based on the detection of common subtrees, initially proposed by Ramon et al. (2003). We propose new kernels with a parameter to…

Quantitative Methods · Quantitative Biology 2016-08-16 Pierre Mahé , Jean-Philippe Vert

For a fixed graph $H$, the $H$-SUBGRAPH HITTING problem consists in deleting the minimum number of vertices from an input graph to obtain a graph without any occurrence of $H$ as a subgraph. This problem can be seen as a generalization of…

Data Structures and Algorithms · Computer Science 2024-04-26 Marin Bougeret , Bart M. P. Jansen , Ignasi Sau

The Odd Cycle Transversal problem (OCT) asks whether a given graph can be made bipartite (i.e., 2-colorable) by deleting at most l vertices. We study structural parameterizations of OCT with respect to their polynomial kernelizability,…

Data Structures and Algorithms · Computer Science 2011-07-20 Bart M. P. Jansen , Stefan Kratsch

It was shown by Grohe et al. that nowhere dense classes of graphs admit sparse neighbourhood covers of small degree. We show that a monotone graph class admits sparse neighbourhood covers if and only if it is nowhere dense. The existence of…

The CONNECTED VERTEX COVER problem asks for a vertex cover in a graph that induces a connected subgraph. The problem is known to be fixed-parameter tractable (FPT), and is unlikely to have a polynomial sized kernel (under complexity…

Data Structures and Algorithms · Computer Science 2018-10-08 R. Krithika , Diptapriyo Majumdar , Venkatesh Raman

A Ranking r-Constraint Satisfaction Problem (ranking r-CSP) consists of a ground set of vertices V, an arity r >= 2, a parameter k and a constraint system c, where c is a function which maps rankings of r-sized subsets of V to {0,1}. The…

Discrete Mathematics · Computer Science 2012-10-26 Anthony Perez

In this paper, we consider the problems of enumerating minimal vertex covers and minimal dominating sets with capacity and/or connectivity constraints. We develop polynomial-delay enumeration algorithms for these problems on bounded-degree…

Data Structures and Algorithms · Computer Science 2024-11-15 Yasuaki Kobayashi , Kazuhiro Kurita , Kevin Mann , Yasuko Matsui , Hirotaka Ono

For a fixed simple digraph $H$ without isolated vertices, we consider the problem of deleting arcs from a given tournament to get a digraph which does not contain $H$ as an immersion. We prove that for every $H$, this problem admits a…

Data Structures and Algorithms · Computer Science 2022-08-17 Łukasz Bożyk , Michał Pilipczuk

Given a planar graph, a subset of its vertices called terminals, and $k \in \mathbb{N}$, the Face Cover Number problem asks whether the terminals lie on the boundaries of at most $k$ faces of some embedding of the input graph. When a plane…

Data Structures and Algorithms · Computer Science 2026-01-08 Thekla Hamm , Sukanya Pandey , Krisztina Szilágyi

Until recently, techniques for obtaining lower bounds for kernelization were one of the most sought after tools in the field of parameterized complexity. Now, after a strong influx of techniques, we are in the fortunate situation of having…

Data Structures and Algorithms · Computer Science 2015-03-19 Stefan Kratsch

We study the existence of polynomial kernels for the problem of deciding feasibility of integer linear programs (ILPs), and for finding good solutions for covering and packing ILPs. Our main results are as follows: First, we show that the…

Computational Complexity · Computer Science 2013-02-18 Stefan Kratsch

Subgraph isomorphism counting is known as #P-complete and requires exponential time to find the accurate solution. Utilizing representation learning has been shown as a promising direction to represent substructures and approximate the…

Machine Learning · Computer Science 2024-05-14 Xin Liu , Weiqi Wang , Jiaxin Bai , Yangqiu Song

We study the parameterized complexity of the connected version of the vertex cover problem, where the solution set has to induce a connected subgraph. Although this problem does not admit a polynomial kernel for general graphs (unless NP is…

Data Structures and Algorithms · Computer Science 2011-10-11 Lukasz Kowalik , Marcin Pilipczuk , Karol Suchan

The notion of Turing kernelization investigates whether a polynomial-time algorithm can solve an NP-hard problem, when it is aided by an oracle that can be queried for the answers to bounded-size subproblems. One of the main open problems…

Data Structures and Algorithms · Computer Science 2017-07-07 Bart M. P. Jansen , Marcin Pilipczuk , Marcin Wrochna

Low-treedepth colorings are an important tool for algorithms that exploit structure in classes of bounded expansion; they guarantee subgraphs that use few colors have bounded treedepth. These colorings have an implicit tradeoff between the…

Data Structures and Algorithms · Computer Science 2018-07-26 Jeremy Kun , Michael P. O'Brien , Marcin Pilipczuk , Blair D. Sullivan

We develop a technique that we call Conflict Packing in the context of kernelization, obtaining (and improving) several polynomial kernels for editing problems on dense instances. We apply this technique on several well-studied problems:…

Data Structures and Algorithms · Computer Science 2014-01-31 Christophe Paul , Anthony Perez , Stéphan Thomassé

Many problems and conjectures in extremal combinatorics concern polynomial inequalities between homomorphism densities of graphs where we allow edges to have real weights. Using the theory of graph limits, we can equivalently evaluate…

Combinatorics · Mathematics 2022-07-26 Grigoriy Blekherman , Annie Raymond , Fan Wei

During the last years, several algorithmic meta-theorems have appeared (Bodlaender et al. [FOCS 2009], Fomin et al. [SODA 2010], Kim et al. [ICALP 2013]) guaranteeing the existence of linear kernels on sparse graphs for problems satisfying…

Data Structures and Algorithms · Computer Science 2016-10-20 Valentin Garnero , Christophe Paul , Ignasi Sau , Dimitrios M. Thilikos
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