Related papers: The quasispecies distribution
In a paper by Lin an interesting family of semipermutations comes out to index the elements of a cohomology basis of a Hessenberg type variety. The corresponding Betti numbers are a generalization of Eulerian numbers. We show three…
A quasispecies evolving on a fitness landscape with a single peak of fluctuating height is studied. In the approximation that back mutations can be ignored, the rate equations can be solved analytically. It is shown that the error threshold…
This note presents a minimal approach to the origin of life, following standard ideas. We pay special attention to the point of view of non-equilibrium statistical mechanics, and in particular to detailed balance. As a consequence we…
In this work, we investigate a quasilinear subdiffusion model which involves a fractional derivative of order $\alpha \in (0,1)$ in time and a nonlinear diffusion coefficient. First, using smoothing properties of solution operators for…
The phase of Quasi-Linkage Equilibrium (QLE) in evolutionary populations is analogous to the thermal equilibrium state in statistical mechanics, a concept pioneered by Kimura in 1965 for two-locus two-allele models. QLE describes a…
We describe a new method for evaluating Bayes factors. The key idea is to introduce a hypermodel in which the competing models are components of a mixture distribution. Inference for the mixing probabilities then yields estimates of the…
A two-parameter family of exchangeable partitions with a simple updating rule is introduced. The partition is identified with a randomized version of a standard symmetric Dirichlet species-sampling model with finitely many types. A…
Schelling's model of segregation is one of the first and most influential models in the field of social simulation. There are many variations of the model which have been proposed and simulated over the last forty years, though the present…
Some epidemics have been empirically observed to exhibit outbreaks of all possible sizes, i.e., to be scalefree or scale-invariant. Different explanations for this finding have been put forward; among them there is a model for "accidental…
In this paper, by resorting to classical methods of statistical mechanics, we build a kinetic model able to reproduce the observed statistical weight distribution of many diverse species. The kinetic description of the time variations of…
This study focuses on open quasispecies systems with competition and death flow, described by modified Eigen and Crow-Kimura models. We examine the evolutionary adaptation process as a reaction to changes in rates. One of the fundamental…
Motivated by observations in sequence data of herpesviruses, we introduce a multi-locus model for the joint evolution of different genotypes in a virus population that is distributed across a population of hosts. In the model, virus…
In a recent paper, we have introduced a new model to describe front propagation in bushfires. This model describes temperature diffusion in view of an ignition process induced by an interaction kernel, the effect of the environmental wind…
It is well known that life on Earth alters its environment over evolutionary and geological timescales. An important open question is whether this is a result of evolutionary optimization or a universal feature of life. In the latter case,…
We propose an extremely simple mathematical model that is shown to be able to account for more than 99 per cent of all the variation in economic and demographic macrodynamics of the world for almost two millennia of its history. This…
Studies on distribution, abundance and diversity of species revealed fascinating universalities in macroecology. Many of these patterns, like the species-area and range-abundance relationship or the year-to-year fluctuations in population…
We consider a class of birth-and-death processes describing a population made of $d$ sub-populations of different types which interact with one another. The state space is $\mathbb{Z}_+^d$ (unbounded). We assume that the population goes…
May (1974,1976) opened the debate on whether biological populations might exhibit nonlinear dynamics and chaos. However, it has in general been difficult to verify nonlinear dynamics in biological populations. There are many reports…
Similar to linear spaces, many examples of quasilinear spaces have a notion of multiplication of the elements. To characterising these examples, in the present paper we generalize the notion of quasilinear spaces and introduce…
Most conspicuous organisms are multicellular and most multicellular organisms develop somatic cells to perform specific, non-reproductive tasks. The ubiquity of this division of labor suggests that it is highly advantageous. In this paper,…