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Modelling the Calvin cycle of photosynthesis leads to various systems of ordinary differential equations and reaction-diffusion equations. They differ by the choice of chemical substances included in the model, the choices of stoichiometric…

Molecular Networks · Quantitative Biology 2015-06-15 Alan D. Rendall , Juan J. L. Velazquez

A phase field model of a crystalline material at the mesoscale is introduced to develop the necessary theoretical framework to study plastic flow due to dislocation motion. We first obtain the elastic stress from the phase field free energy…

Materials Science · Physics 2018-03-07 Audun Skaugen , Luiza Angheluta , Jorge Viñals

Organic molecular crystals encompass a vast range of materials from pharmaceuticals to organic optoelectronics and proteins to waxes in biological and industrial settings. Crystal defects from grain boundaries to dislocations are known to…

Materials Science · Physics 2023-09-01 Sang T. Pham , Natalia Koniuch , Emily Wynne , Andy Brown , Sean M. Collins

We investigate the physical properties of steady flows in a holographic first-order phase transition model, extending from the thermodynamics at equilibrium to the real-time dynamics far from equilibrium. Through spinodal decomposition or…

High Energy Physics - Theory · Physics 2025-01-24 Qian Chen , Yuxuan Liu , Yu Tian , Xiaoning Wu , Hongbao Zhang

New aspects of a relation between lattice and dislocation structures are examined within a physically transparent theoretical scheme. Predicted features originating from the lattice discreteness include: (i) multiple core dislocation…

Materials Science · Physics 2007-05-23 Oleg N. Mryasov , Yu. N. Gornostyrev , A. J. Freeman

The dynamics of dislocations is reported to exhibit glassy properties. We study numerically various versions of 2d edge dislocation systems in the absence of externally applied stress. Two types of glassy behavior are identified: (i)…

Disordered Systems and Neural Networks · Physics 2009-11-13 B. Bako , I. Groma , G. Gyorgyi , G. T. Zimanyi

By analytically solving some simple models of phase-ordering kinetics, we suggest a mechanism for the onset of non-equilibrium behaviour in colloid-polymer mixtures. These mixtures can function as models of atomic systems; their physics…

Soft Condensed Matter · Physics 2016-08-31 R. M. L. Evans , W. C. K. Poon

In this paper a geometric field theory of dislocation dynamics and finite plasticity in single crystals is formulated. Starting from the multiplicative decomposition of the deformation gradient into elastic and plastic parts, we use…

Materials Science · Physics 2023-08-02 Fabio Sozio , Arash Yavari

Effects of heterogeneity of mineral distribution and reaction rate on the rock dissolution process are investigated using a pore-scale reactive transport model based on the lattice Boltzmann method. Coupled fluid flow, species transport,…

Fluid Dynamics · Physics 2015-11-16 Ting Min , Yimin Gao , Li Chen , Qinjun Kang , Wen-Quan Tao

We study the kinetics of the nematic-isotropic transition in a two-dimensional liquid crystal by using a lattice Boltzmann scheme that couples the tensor order parameter and the flow consistently. Unlike in previous studies, we find the…

Soft Condensed Matter · Physics 2009-11-07 Colin Denniston , Enzo Orlandini , J. M. Yeomans

There are a number of situations in which rescaled interacting particle systems have been shown to converge to a reaction diffusion equation (RDE) with a bistable reaction term. These RDEs have traveling wave solutions. When the speed of…

Probability · Mathematics 2021-07-19 Xiangying Huang , Rick Durrett

A discrete model describing defects in crystal lattices and having the standard linear anisotropic elasticity as its continuum limit is proposed. The main ingredients entering the model are the elastic stiffness constants of the material…

Materials Science · Physics 2007-05-23 A. Carpio , L. L. Bonilla

In this paper, we proposed a stochastic model which describes two species of particles moving in counterflow. The model generalizes the theoretical framework describing the transport in random systems since particles can work as mobile…

Soft Condensed Matter · Physics 2017-08-09 Eduardo Velasco Stock , Roberto da Silva , Henrique Almeida Fernandes

A single mechanism, endemic to the standard model of physics, is proposed to explain wavefunction collapse, classical motion, dissipation, equilibration, and the transition from pure quantum mechanics through open system decoherence to the…

General Physics · Physics 2024-09-23 J. H. Brownell

Amorphous solids are ubiquitous among natural and man-made materials. Often used as structural materials for their attractive mechanical properties, their utility depends critically on their response to applied stresses. Processes…

Disordered Systems and Neural Networks · Physics 2017-04-05 Premkumar Leishangthem , Anshul D. S. Parmar , Srikanth Sastry

In recent years there has been renewed interest in the behavior of dislocations in crystals that exhibit strong atomic scale disorder, as typical of compositionally complex single phase alloys. The behavior of dislocations in such crystals…

Materials Science · Physics 2021-10-26 Aviral Vaid , De'an Wei , Erik Bitzek , Samaneh Nasiri , Michael Zaiser

An action functional is developed for nonlinear dislocation dynamics. This serves as a first step towards the application of effective field theory in physics to evaluate its potential in obtaining a macroscopic description of dislocation…

Materials Science · Physics 2022-03-14 Amit Acharya

Due to recent successes of a statistical-based nonlocal continuum crystal plasticity theory for single-glide in explaining various aspects such as dislocation patterning and size-dependent plasticity, several attempts have been made to…

Statistical Mechanics · Physics 2009-11-13 Surachate Limkumnerd , Erik Van de Giessen

We study experimentally the relaxation towards mechanical equilibrium of a granular pile which has just experienced an avalanche and discuss it in the more general context of the granular jamming transition. Two coexisting dynamics are…

Soft Condensed Matter · Physics 2009-11-10 S. Deboeuf , E. M. Bertin , E. Lajeunesse , O. Dauchot

Nucleation is an activated process in which the system has to overcome a free energy barrier in order for a first-order phase transition between the metastable and the stable phases to take place. In the liquid-to-solid transition the…

Soft Condensed Matter · Physics 2016-11-28 John Russo , Hajime Tanaka