Related papers: Kruskal's Tree Theorem for Acyclic Term Graphs
Harvey Friedman's gap condition on embeddings of finite labelled trees plays an important role in combinatorics (proof of the graph minor theorem) and mathematical logic (strong independence results). In the present paper we show that the…
In this paper, we introduce the Fixed Topology Minimum-Length Tree with Neighborhood Problem, which aims to embed a rooted tree-shaped graph into a $d$-dimensional metric space while minimizing its total length provided that the nodes must…
Recent investigations in computational biology have focused on a family of 2-colored digraphs, called 2-colored best match graphs, which naturally arise from rooted phylogenetic trees. Actually the defining properties of such graphs are…
We define a special case of tree decompositions for planar graphs that respect a given embedding of the graph. We study the analogous width of the resulting decomposition we call the embedded-width of a plane graph. We show both upper…
Estimating the structure of directed acyclic graphs (DAGs, also known as Bayesian networks) is a challenging problem since the search space of DAGs is combinatorial and scales superexponentially with the number of nodes. Existing approaches…
This paper studies the structure of graphs with given tree-width and excluding a fixed complete bipartite subgraph, which generalises the bounded degree setting. We give a new structural description of such graphs in terms of so-called…
The bidimensionality of a set of vertices $X$ in a graph $G$ is the maximum $k$ for which $G$ contains as a $X$-rooted minor the $(k \times k)$-grid. This notion allows for the following version of the Graph Minors Structure Theorem (GMST)…
In some applications of matching, the structural or hierarchical properties of the two graphs being aligned must be maintained. The hierarchical properties are induced by the direction of the edges in the two directed graphs. These…
Following the lead of Stanley and Gessel, we consider a morphism which associates to an acyclic directed graph (or a poset) a quasi-symmetric function. The latter is naturally defined as multivariate generating series of non-decreasing…
Building on previous work by Cameron et al. in [3], we give a recurrence for computing the number of acyclic orientations of complete $k$-partite graphs, which can be implemented to obtain a dynamic programming algorithm running in time…
Rooted phylogenetic networks are rooted acyclic digraphs. They are used to model complex evolution where hybridization, recombination and other reticulation events play important roles. A rigorous definition of network compression is…
The central theorem of topological graph theory states that the graph minor relation is a well-quasi-order on graphs. It has far-reaching consequences, in particular in the study of graph structures and the design of (parameterized)…
We give an algebraic presentation of directed acyclic graph structure, introducing a symmetric monoidal equational theory whose free PROP we characterise as that of finite abstract dags with input/output interfaces. Our development provides…
For the generation of acyclic biological diagrams, from a graph-theoretical perspective, we introduce the relative diagrams of cyclic permutations with ramphoid and keratoid vertices of degree 2, which correspond to Motzkin and Dyck…
We present a theory and an objective function for similarity-based hierarchical clustering of probabilistic partial orders and directed acyclic graphs (DAGs). Specifically, given elements $x \le y$ in the partial order, and their respective…
The canonical tree-decomposition theorem, given by Robertson and Seymour in their seminal graph minors series, turns out to be one of the most important tool in structural and algorithmic graph theory. In this paper, we provide the…
In this paper, we propose a new type of graph, denoted as "embedded-graph", and its theory, which employs a distributed representation to describe the relations on the graph edges. Embedded-graphs can express linguistic and complicated…
Let $C^*(E)$ be the graph $C^*$-algebra associated to a graph E and let J be a gauge invariant ideal in $C^*(E)$. We compute the cyclic six-term exact sequence in $K$-theory of the associated extension in terms of the adjacency matrix…
Terms are a concise representation of tree structures. Since they can be naturally defined by an inductive type, they offer data structures in functional programming and mechanised reasoning with useful principles such as structural…
We give two new conditions on topological $k$-graphs that are equivalent to the Yeend's aperiodicity Condition (A). Each of the new conditions concerns finite paths rather than infinite. We use a specific example, resulting from a new…